Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
TRIM56Q9BRZ2 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
TRIM56Q9BRZ2 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC20.86■□□□□ 0.93
TRIM56Q9BRZ2 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM56Q9BRZ2 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM56Q9BRZ2 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM56Q9BRZ2 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM56Q9BRZ2 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM56Q9BRZ2 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC20.86■□□□□ 0.93
TRIM56Q9BRZ2 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC20.86■□□□□ 0.93
TRIM56Q9BRZ2 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM56Q9BRZ2 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC20.85■□□□□ 0.93
TRIM56Q9BRZ2 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM56Q9BRZ2 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM56Q9BRZ2 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM56Q9BRZ2 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM56Q9BRZ2 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM56Q9BRZ2 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM56Q9BRZ2 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
TRIM56Q9BRZ2 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM56Q9BRZ2 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM56Q9BRZ2 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM56Q9BRZ2 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC20.85■□□□□ 0.93
TRIM56Q9BRZ2 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM56Q9BRZ2 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
TRIM56Q9BRZ2 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM56Q9BRZ2 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC20.85■□□□□ 0.93
TRIM56Q9BRZ2 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC20.85■□□□□ 0.93
TRIM56Q9BRZ2 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC20.85■□□□□ 0.93
TRIM56Q9BRZ2 RARRES2P11-201ENST00000635158 484 ntBASIC20.85■□□□□ 0.93
TRIM56Q9BRZ2 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM56Q9BRZ2 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM56Q9BRZ2 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC20.85■□□□□ 0.93
TRIM56Q9BRZ2 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC20.85■□□□□ 0.93
TRIM56Q9BRZ2 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM56Q9BRZ2 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM56Q9BRZ2 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
TRIM56Q9BRZ2 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM56Q9BRZ2 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM56Q9BRZ2 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM56Q9BRZ2 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM56Q9BRZ2 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM56Q9BRZ2 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.84■□□□□ 0.93
TRIM56Q9BRZ2 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM56Q9BRZ2 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM56Q9BRZ2 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM56Q9BRZ2 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC20.84■□□□□ 0.93
TRIM56Q9BRZ2 AC138907.5-202ENST00000569484 235 ntBASIC20.84■□□□□ 0.93
TRIM56Q9BRZ2 AC104187.1-201ENST00000607510 612 ntBASIC20.84■□□□□ 0.93
TRIM56Q9BRZ2 SP2-202ENST00000613139 908 ntTSL 5 BASIC20.84■□□□□ 0.93
TRIM56Q9BRZ2 AC011484.1-201ENST00000377652 1995 ntBASIC20.84■□□□□ 0.93
TRIM56Q9BRZ2 DET1-207ENST00000564406 2315 ntTSL 2 BASIC20.84■□□□□ 0.93
TRIM56Q9BRZ2 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM56Q9BRZ2 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.84■□□□□ 0.93
TRIM56Q9BRZ2 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC20.84■□□□□ 0.93
TRIM56Q9BRZ2 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC20.84■□□□□ 0.93
TRIM56Q9BRZ2 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC20.84■□□□□ 0.93
TRIM56Q9BRZ2 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM56Q9BRZ2 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.84■□□□□ 0.93
TRIM56Q9BRZ2 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20.84■□□□□ 0.93
TRIM56Q9BRZ2 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM56Q9BRZ2 LINC02228-203ENST00000641970 1355 ntBASIC20.84■□□□□ 0.93
TRIM56Q9BRZ2 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM56Q9BRZ2 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC20.84■□□□□ 0.93
TRIM56Q9BRZ2 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
TRIM56Q9BRZ2 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC20.83■□□□□ 0.93
TRIM56Q9BRZ2 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC20.83■□□□□ 0.93
TRIM56Q9BRZ2 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC20.83■□□□□ 0.93
TRIM56Q9BRZ2 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
TRIM56Q9BRZ2 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
TRIM56Q9BRZ2 AC020907.5-201ENST00000624372 1936 ntBASIC20.83■□□□□ 0.93
TRIM56Q9BRZ2 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC20.83■□□□□ 0.93
TRIM56Q9BRZ2 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
TRIM56Q9BRZ2 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC20.83■□□□□ 0.93
TRIM56Q9BRZ2 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC20.83■□□□□ 0.93
TRIM56Q9BRZ2 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC20.83■□□□□ 0.93
TRIM56Q9BRZ2 SLC7A5P2-201ENST00000553010 536 ntBASIC20.83■□□□□ 0.93
TRIM56Q9BRZ2 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.83■□□□□ 0.92
TRIM56Q9BRZ2 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
TRIM56Q9BRZ2 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
TRIM56Q9BRZ2 AL512408.1-201ENST00000569378 2000 ntBASIC20.83■□□□□ 0.92
TRIM56Q9BRZ2 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
TRIM56Q9BRZ2 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
TRIM56Q9BRZ2 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
TRIM56Q9BRZ2 AFG3L1P-217ENST00000557444 2447 ntBASIC20.83■□□□□ 0.92
TRIM56Q9BRZ2 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
TRIM56Q9BRZ2 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC20.82■□□□□ 0.92
TRIM56Q9BRZ2 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM56Q9BRZ2 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM56Q9BRZ2 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM56Q9BRZ2 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM56Q9BRZ2 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC20.82■□□□□ 0.92
TRIM56Q9BRZ2 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM56Q9BRZ2 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC20.82■□□□□ 0.92
TRIM56Q9BRZ2 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM56Q9BRZ2 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
TRIM56Q9BRZ2 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM56Q9BRZ2 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM56Q9BRZ2 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM56Q9BRZ2 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC20.82■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms