Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
VPS13AQ96RL7 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
VPS13AQ96RL7 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
VPS13AQ96RL7 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
VPS13AQ96RL7 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VPS13AQ96RL7 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
VPS13AQ96RL7 MOK-233ENST00000524214 1539 ntTSL 2 BASIC20.49■□□□□ 0.87
VPS13AQ96RL7 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC20.49■□□□□ 0.87
VPS13AQ96RL7 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS13AQ96RL7 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
VPS13AQ96RL7 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC20.48■□□□□ 0.87
VPS13AQ96RL7 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
VPS13AQ96RL7 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC20.48■□□□□ 0.87
VPS13AQ96RL7 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS13AQ96RL7 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.48■□□□□ 0.87
VPS13AQ96RL7 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS13AQ96RL7 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
VPS13AQ96RL7 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS13AQ96RL7 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS13AQ96RL7 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS13AQ96RL7 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS13AQ96RL7 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS13AQ96RL7 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS13AQ96RL7 AC104076.2-201ENST00000448912 469 ntBASIC20.48■□□□□ 0.87
VPS13AQ96RL7 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
VPS13AQ96RL7 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.48■□□□□ 0.87
VPS13AQ96RL7 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
VPS13AQ96RL7 AC010542.4-201ENST00000563151 1910 ntBASIC20.48■□□□□ 0.87
VPS13AQ96RL7 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
VPS13AQ96RL7 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS13AQ96RL7 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS13AQ96RL7 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC20.48■□□□□ 0.87
VPS13AQ96RL7 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC20.47■□□□□ 0.87
VPS13AQ96RL7 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS13AQ96RL7 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
VPS13AQ96RL7 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS13AQ96RL7 AC006011.2-201ENST00000621313 1158 ntBASIC20.47■□□□□ 0.87
VPS13AQ96RL7 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS13AQ96RL7 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.47■□□□□ 0.87
VPS13AQ96RL7 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
VPS13AQ96RL7 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC20.47■□□□□ 0.87
VPS13AQ96RL7 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC20.47■□□□□ 0.87
VPS13AQ96RL7 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS13AQ96RL7 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
VPS13AQ96RL7 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
VPS13AQ96RL7 AC027702.1-201ENST00000563810 1770 ntBASIC20.47■□□□□ 0.87
VPS13AQ96RL7 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
VPS13AQ96RL7 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS13AQ96RL7 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
VPS13AQ96RL7 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VPS13AQ96RL7 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VPS13AQ96RL7 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
VPS13AQ96RL7 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC20.46■□□□□ 0.87
VPS13AQ96RL7 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
VPS13AQ96RL7 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
VPS13AQ96RL7 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
VPS13AQ96RL7 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
VPS13AQ96RL7 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC20.46■□□□□ 0.87
VPS13AQ96RL7 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
VPS13AQ96RL7 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
VPS13AQ96RL7 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC20.46■□□□□ 0.87
VPS13AQ96RL7 GLDC-219ENST00000640208 420 ntTSL 2 BASIC20.46■□□□□ 0.87
VPS13AQ96RL7 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VPS13AQ96RL7 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
VPS13AQ96RL7 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC20.46■□□□□ 0.87
VPS13AQ96RL7 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VPS13AQ96RL7 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC20.46■□□□□ 0.87
VPS13AQ96RL7 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
VPS13AQ96RL7 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
VPS13AQ96RL7 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
VPS13AQ96RL7 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VPS13AQ96RL7 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
VPS13AQ96RL7 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
VPS13AQ96RL7 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
VPS13AQ96RL7 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC20.45■□□□□ 0.86
VPS13AQ96RL7 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
VPS13AQ96RL7 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC20.45■□□□□ 0.86
VPS13AQ96RL7 AC006557.6-201ENST00000623071 864 ntBASIC20.45■□□□□ 0.86
VPS13AQ96RL7 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC20.45■□□□□ 0.86
VPS13AQ96RL7 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
VPS13AQ96RL7 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VPS13AQ96RL7 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VPS13AQ96RL7 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VPS13AQ96RL7 SLC25A3P1-201ENST00000443844 931 ntBASIC20.45■□□□□ 0.86
VPS13AQ96RL7 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC20.45■□□□□ 0.86
VPS13AQ96RL7 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC20.45■□□□□ 0.86
VPS13AQ96RL7 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC20.45■□□□□ 0.86
VPS13AQ96RL7 AP000525.1-201ENST00000608286 694 ntBASIC20.45■□□□□ 0.86
VPS13AQ96RL7 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VPS13AQ96RL7 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
VPS13AQ96RL7 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VPS13AQ96RL7 LINC01568-207ENST00000641790 1380 ntBASIC20.45■□□□□ 0.86
VPS13AQ96RL7 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VPS13AQ96RL7 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC20.45■□□□□ 0.86
VPS13AQ96RL7 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
VPS13AQ96RL7 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
VPS13AQ96RL7 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VPS13AQ96RL7 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC20.44■□□□□ 0.86
VPS13AQ96RL7 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
VPS13AQ96RL7 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms