Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 KRT16P2-201ENST00000414673 1423 ntBASIC19.56■□□□□ 0.72
VMP1Q96GC9 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VMP1Q96GC9 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VMP1Q96GC9 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
VMP1Q96GC9 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
VMP1Q96GC9 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
VMP1Q96GC9 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC19.55■□□□□ 0.72
VMP1Q96GC9 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VMP1Q96GC9 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VMP1Q96GC9 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
VMP1Q96GC9 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC19.55■□□□□ 0.72
VMP1Q96GC9 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VMP1Q96GC9 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VMP1Q96GC9 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC19.55■□□□□ 0.72
VMP1Q96GC9 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC19.55■□□□□ 0.72
VMP1Q96GC9 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VMP1Q96GC9 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC19.55■□□□□ 0.72
VMP1Q96GC9 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VMP1Q96GC9 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC19.55■□□□□ 0.72
VMP1Q96GC9 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC19.55■□□□□ 0.72
VMP1Q96GC9 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC19.55■□□□□ 0.72
VMP1Q96GC9 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
VMP1Q96GC9 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC19.55■□□□□ 0.72
VMP1Q96GC9 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
VMP1Q96GC9 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VMP1Q96GC9 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VMP1Q96GC9 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VMP1Q96GC9 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VMP1Q96GC9 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
VMP1Q96GC9 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VMP1Q96GC9 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VMP1Q96GC9 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VMP1Q96GC9 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.55■□□□□ 0.72
VMP1Q96GC9 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
VMP1Q96GC9 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VMP1Q96GC9 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
VMP1Q96GC9 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VMP1Q96GC9 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VMP1Q96GC9 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VMP1Q96GC9 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VMP1Q96GC9 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC19.54■□□□□ 0.72
VMP1Q96GC9 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC19.54■□□□□ 0.72
VMP1Q96GC9 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC19.54■□□□□ 0.72
VMP1Q96GC9 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC19.54■□□□□ 0.72
VMP1Q96GC9 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC19.54■□□□□ 0.72
VMP1Q96GC9 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC19.54■□□□□ 0.72
VMP1Q96GC9 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
VMP1Q96GC9 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
VMP1Q96GC9 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.54■□□□□ 0.72
VMP1Q96GC9 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC19.54■□□□□ 0.72
VMP1Q96GC9 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VMP1Q96GC9 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC19.54■□□□□ 0.72
VMP1Q96GC9 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VMP1Q96GC9 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC19.54■□□□□ 0.72
VMP1Q96GC9 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VMP1Q96GC9 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
VMP1Q96GC9 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VMP1Q96GC9 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC19.54■□□□□ 0.72
VMP1Q96GC9 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
VMP1Q96GC9 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.53■□□□□ 0.72
VMP1Q96GC9 AC061975.6-201ENST00000579045 1553 ntBASIC19.53■□□□□ 0.72
VMP1Q96GC9 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VMP1Q96GC9 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
VMP1Q96GC9 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
VMP1Q96GC9 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC19.53■□□□□ 0.72
VMP1Q96GC9 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
VMP1Q96GC9 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC19.53■□□□□ 0.72
VMP1Q96GC9 CDCA4P2-201ENST00000441182 718 ntBASIC19.53■□□□□ 0.72
VMP1Q96GC9 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC19.53■□□□□ 0.72
VMP1Q96GC9 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC19.53■□□□□ 0.72
VMP1Q96GC9 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC19.53■□□□□ 0.72
VMP1Q96GC9 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC19.53■□□□□ 0.72
VMP1Q96GC9 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC19.53■□□□□ 0.72
VMP1Q96GC9 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC19.53■□□□□ 0.72
VMP1Q96GC9 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VMP1Q96GC9 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC19.53■□□□□ 0.72
VMP1Q96GC9 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VMP1Q96GC9 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
VMP1Q96GC9 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VMP1Q96GC9 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19.53■□□□□ 0.72
VMP1Q96GC9 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VMP1Q96GC9 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC19.52■□□□□ 0.72
VMP1Q96GC9 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
VMP1Q96GC9 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC19.52■□□□□ 0.72
VMP1Q96GC9 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VMP1Q96GC9 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VMP1Q96GC9 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VMP1Q96GC9 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19.52■□□□□ 0.72
VMP1Q96GC9 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VMP1Q96GC9 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
VMP1Q96GC9 AC026185.1-201ENST00000445748 174 ntBASIC19.52■□□□□ 0.72
VMP1Q96GC9 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC19.52■□□□□ 0.72
VMP1Q96GC9 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC19.52■□□□□ 0.72
VMP1Q96GC9 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
VMP1Q96GC9 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC19.52■□□□□ 0.72
VMP1Q96GC9 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC19.52■□□□□ 0.72
VMP1Q96GC9 AC010536.3-201ENST00000620306 533 ntBASIC19.52■□□□□ 0.72
VMP1Q96GC9 AC231657.2-201ENST00000624556 255 ntBASIC19.52■□□□□ 0.72
VMP1Q96GC9 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VMP1Q96GC9 AF106564.1-201ENST00000607058 2553 ntBASIC19.52■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms