Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC23.22■■□□□ 1.31
ERCC4Q92889 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
ERCC4Q92889 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
ERCC4Q92889 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC23.21■■□□□ 1.31
ERCC4Q92889 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
ERCC4Q92889 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC23.21■■□□□ 1.31
ERCC4Q92889 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
ERCC4Q92889 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
ERCC4Q92889 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC23.21■■□□□ 1.31
ERCC4Q92889 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC23.21■■□□□ 1.31
ERCC4Q92889 AP004607.4-201ENST00000530158 1459 ntBASIC23.21■■□□□ 1.31
ERCC4Q92889 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
ERCC4Q92889 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
ERCC4Q92889 AC011484.1-201ENST00000377652 1995 ntBASIC23.21■■□□□ 1.31
ERCC4Q92889 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
ERCC4Q92889 USP39-204ENST00000409766 2033 ntTSL 2 BASIC23.21■■□□□ 1.31
ERCC4Q92889 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC23.21■■□□□ 1.31
ERCC4Q92889 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
ERCC4Q92889 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC23.21■■□□□ 1.31
ERCC4Q92889 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
ERCC4Q92889 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC23.2■■□□□ 1.3
ERCC4Q92889 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
ERCC4Q92889 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
ERCC4Q92889 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
ERCC4Q92889 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC23.2■■□□□ 1.3
ERCC4Q92889 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
ERCC4Q92889 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
ERCC4Q92889 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC23.2■■□□□ 1.3
ERCC4Q92889 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
ERCC4Q92889 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
ERCC4Q92889 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
ERCC4Q92889 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC23.2■■□□□ 1.3
ERCC4Q92889 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
ERCC4Q92889 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC23.2■■□□□ 1.3
ERCC4Q92889 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
ERCC4Q92889 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
ERCC4Q92889 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
ERCC4Q92889 AL162377.1-201ENST00000618844 1793 ntBASIC23.19■■□□□ 1.3
ERCC4Q92889 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
ERCC4Q92889 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC23.19■■□□□ 1.3
ERCC4Q92889 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
ERCC4Q92889 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
ERCC4Q92889 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC23.19■■□□□ 1.3
ERCC4Q92889 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC23.19■■□□□ 1.3
ERCC4Q92889 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
ERCC4Q92889 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
ERCC4Q92889 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
ERCC4Q92889 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC23.19■■□□□ 1.3
ERCC4Q92889 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
ERCC4Q92889 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
ERCC4Q92889 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
ERCC4Q92889 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
ERCC4Q92889 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC23.18■■□□□ 1.3
ERCC4Q92889 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
ERCC4Q92889 AL139246.5-201ENST00000606645 996 ntBASIC23.18■■□□□ 1.3
ERCC4Q92889 AL354811.1-201ENST00000610286 706 ntBASIC23.18■■□□□ 1.3
ERCC4Q92889 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
ERCC4Q92889 CPT2-209ENST00000636935 803 ntTSL 5 BASIC23.18■■□□□ 1.3
ERCC4Q92889 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
ERCC4Q92889 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC23.18■■□□□ 1.3
ERCC4Q92889 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
ERCC4Q92889 AC099778.1-201ENST00000568593 1911 ntBASIC23.18■■□□□ 1.3
ERCC4Q92889 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
ERCC4Q92889 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
ERCC4Q92889 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC23.17■■□□□ 1.3
ERCC4Q92889 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC23.17■■□□□ 1.3
ERCC4Q92889 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
ERCC4Q92889 HYI-206ENST00000372434 1025 ntTSL 5 BASIC23.17■■□□□ 1.3
ERCC4Q92889 AC142381.2-201ENST00000566120 298 ntBASIC23.17■■□□□ 1.3
ERCC4Q92889 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
ERCC4Q92889 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
ERCC4Q92889 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
ERCC4Q92889 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC23.16■■□□□ 1.3
ERCC4Q92889 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
ERCC4Q92889 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
ERCC4Q92889 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC23.16■■□□□ 1.3
ERCC4Q92889 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
ERCC4Q92889 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
ERCC4Q92889 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
ERCC4Q92889 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
ERCC4Q92889 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
ERCC4Q92889 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
ERCC4Q92889 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
ERCC4Q92889 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC23.16■■□□□ 1.3
ERCC4Q92889 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC23.16■■□□□ 1.3
ERCC4Q92889 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC23.16■■□□□ 1.3
ERCC4Q92889 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
ERCC4Q92889 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
ERCC4Q92889 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
ERCC4Q92889 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
ERCC4Q92889 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
ERCC4Q92889 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC23.15■■□□□ 1.3
ERCC4Q92889 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC23.15■■□□□ 1.3
ERCC4Q92889 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
ERCC4Q92889 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC23.15■■□□□ 1.3
ERCC4Q92889 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
ERCC4Q92889 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC23.15■■□□□ 1.3
ERCC4Q92889 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
ERCC4Q92889 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC23.15■■□□□ 1.3
ERCC4Q92889 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC23.15■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms