Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC21.26■□□□□ 0.99
ATG4AQ8WYN0 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
ATG4AQ8WYN0 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
ATG4AQ8WYN0 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
ATG4AQ8WYN0 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
ATG4AQ8WYN0 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
ATG4AQ8WYN0 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
ATG4AQ8WYN0 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC21.25■□□□□ 0.99
ATG4AQ8WYN0 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
ATG4AQ8WYN0 KRT16P2-201ENST00000414673 1423 ntBASIC21.25■□□□□ 0.99
ATG4AQ8WYN0 AC010141.2-201ENST00000452426 721 ntBASIC21.25■□□□□ 0.99
ATG4AQ8WYN0 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
ATG4AQ8WYN0 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
ATG4AQ8WYN0 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC21.25■□□□□ 0.99
ATG4AQ8WYN0 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC21.25■□□□□ 0.99
ATG4AQ8WYN0 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC21.25■□□□□ 0.99
ATG4AQ8WYN0 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
ATG4AQ8WYN0 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
ATG4AQ8WYN0 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC21.24■□□□□ 0.99
ATG4AQ8WYN0 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
ATG4AQ8WYN0 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
ATG4AQ8WYN0 AC245052.3-201ENST00000450182 901 ntBASIC21.24■□□□□ 0.99
ATG4AQ8WYN0 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC21.24■□□□□ 0.99
ATG4AQ8WYN0 SLC7A5P2-201ENST00000553010 536 ntBASIC21.24■□□□□ 0.99
ATG4AQ8WYN0 AC104187.1-201ENST00000607510 612 ntBASIC21.24■□□□□ 0.99
ATG4AQ8WYN0 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
ATG4AQ8WYN0 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
ATG4AQ8WYN0 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC21.24■□□□□ 0.99
ATG4AQ8WYN0 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC21.24■□□□□ 0.99
ATG4AQ8WYN0 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
ATG4AQ8WYN0 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC21.24■□□□□ 0.99
ATG4AQ8WYN0 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
ATG4AQ8WYN0 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
ATG4AQ8WYN0 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
ATG4AQ8WYN0 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
ATG4AQ8WYN0 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
ATG4AQ8WYN0 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC21.23■□□□□ 0.99
ATG4AQ8WYN0 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
ATG4AQ8WYN0 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
ATG4AQ8WYN0 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC21.23■□□□□ 0.99
ATG4AQ8WYN0 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
ATG4AQ8WYN0 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
ATG4AQ8WYN0 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC21.23■□□□□ 0.99
ATG4AQ8WYN0 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
ATG4AQ8WYN0 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC21.23■□□□□ 0.99
ATG4AQ8WYN0 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
ATG4AQ8WYN0 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
ATG4AQ8WYN0 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
ATG4AQ8WYN0 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
ATG4AQ8WYN0 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
ATG4AQ8WYN0 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC21.22■□□□□ 0.99
ATG4AQ8WYN0 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
ATG4AQ8WYN0 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC21.22■□□□□ 0.99
ATG4AQ8WYN0 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
ATG4AQ8WYN0 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
ATG4AQ8WYN0 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC21.22■□□□□ 0.99
ATG4AQ8WYN0 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
ATG4AQ8WYN0 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC21.22■□□□□ 0.99
ATG4AQ8WYN0 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC21.22■□□□□ 0.99
ATG4AQ8WYN0 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
ATG4AQ8WYN0 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
ATG4AQ8WYN0 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
ATG4AQ8WYN0 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC21.22■□□□□ 0.99
ATG4AQ8WYN0 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC21.22■□□□□ 0.99
ATG4AQ8WYN0 LINC02228-203ENST00000641970 1355 ntBASIC21.22■□□□□ 0.99
ATG4AQ8WYN0 AC092720.2-201ENST00000602388 1665 ntBASIC21.21■□□□□ 0.99
ATG4AQ8WYN0 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
ATG4AQ8WYN0 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC21.21■□□□□ 0.99
ATG4AQ8WYN0 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
ATG4AQ8WYN0 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
ATG4AQ8WYN0 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC21.21■□□□□ 0.99
ATG4AQ8WYN0 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC21.21■□□□□ 0.99
ATG4AQ8WYN0 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
ATG4AQ8WYN0 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC21.21■□□□□ 0.99
ATG4AQ8WYN0 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
ATG4AQ8WYN0 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
ATG4AQ8WYN0 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
ATG4AQ8WYN0 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
ATG4AQ8WYN0 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
ATG4AQ8WYN0 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC21.21■□□□□ 0.99
ATG4AQ8WYN0 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC21.21■□□□□ 0.99
ATG4AQ8WYN0 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC21.21■□□□□ 0.99
ATG4AQ8WYN0 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
ATG4AQ8WYN0 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
ATG4AQ8WYN0 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
ATG4AQ8WYN0 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC21.21■□□□□ 0.99
ATG4AQ8WYN0 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
ATG4AQ8WYN0 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
ATG4AQ8WYN0 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC21.2■□□□□ 0.99
ATG4AQ8WYN0 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC21.2■□□□□ 0.99
ATG4AQ8WYN0 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC21.2■□□□□ 0.99
ATG4AQ8WYN0 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
ATG4AQ8WYN0 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC21.2■□□□□ 0.98
ATG4AQ8WYN0 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
ATG4AQ8WYN0 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
ATG4AQ8WYN0 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC21.2■□□□□ 0.98
ATG4AQ8WYN0 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
ATG4AQ8WYN0 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC21.2■□□□□ 0.98
ATG4AQ8WYN0 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC21.2■□□□□ 0.98
ATG4AQ8WYN0 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms