Protein–RNA interactions for Protein: Q8NC44

RETREG2, Reticulophagy regulator 2, humanhuman

Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG2Q8NC44 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
RETREG2Q8NC44 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
RETREG2Q8NC44 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
RETREG2Q8NC44 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
RETREG2Q8NC44 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC23.21■■□□□ 1.31
RETREG2Q8NC44 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
RETREG2Q8NC44 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
RETREG2Q8NC44 AF106564.1-201ENST00000607058 2553 ntBASIC23.21■■□□□ 1.31
RETREG2Q8NC44 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
RETREG2Q8NC44 BAALC-201ENST00000297574 801 ntTSL 3 BASIC23.21■■□□□ 1.31
RETREG2Q8NC44 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
RETREG2Q8NC44 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
RETREG2Q8NC44 AC128676.1-201ENST00000454392 318 ntBASIC23.21■■□□□ 1.31
RETREG2Q8NC44 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
RETREG2Q8NC44 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC23.21■■□□□ 1.31
RETREG2Q8NC44 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
RETREG2Q8NC44 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC23.21■■□□□ 1.31
RETREG2Q8NC44 INO80E-214ENST00000620599 515 ntTSL 2 BASIC23.21■■□□□ 1.31
RETREG2Q8NC44 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC23.21■■□□□ 1.31
RETREG2Q8NC44 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC23.21■■□□□ 1.31
RETREG2Q8NC44 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
RETREG2Q8NC44 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.31
RETREG2Q8NC44 NARF-205ENST00000412079 1760 ntTSL 5 BASIC23.2■■□□□ 1.3
RETREG2Q8NC44 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RETREG2Q8NC44 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RETREG2Q8NC44 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
RETREG2Q8NC44 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RETREG2Q8NC44 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC23.2■■□□□ 1.3
RETREG2Q8NC44 LSM12P1-201ENST00000411836 588 ntBASIC23.2■■□□□ 1.3
RETREG2Q8NC44 OR2A1-AS1-201ENST00000462305 773 ntBASIC23.2■■□□□ 1.3
RETREG2Q8NC44 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC23.2■■□□□ 1.3
RETREG2Q8NC44 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC23.2■■□□□ 1.3
RETREG2Q8NC44 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC23.2■■□□□ 1.3
RETREG2Q8NC44 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC23.2■■□□□ 1.3
RETREG2Q8NC44 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RETREG2Q8NC44 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
RETREG2Q8NC44 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
RETREG2Q8NC44 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RETREG2Q8NC44 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RETREG2Q8NC44 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RETREG2Q8NC44 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RETREG2Q8NC44 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RETREG2Q8NC44 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RETREG2Q8NC44 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RETREG2Q8NC44 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC23.19■■□□□ 1.3
RETREG2Q8NC44 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RETREG2Q8NC44 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RETREG2Q8NC44 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RETREG2Q8NC44 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RETREG2Q8NC44 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
RETREG2Q8NC44 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
RETREG2Q8NC44 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC23.19■■□□□ 1.3
RETREG2Q8NC44 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC23.19■■□□□ 1.3
RETREG2Q8NC44 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RETREG2Q8NC44 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC23.19■■□□□ 1.3
RETREG2Q8NC44 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RETREG2Q8NC44 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RETREG2Q8NC44 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
RETREG2Q8NC44 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
RETREG2Q8NC44 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
RETREG2Q8NC44 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
RETREG2Q8NC44 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
RETREG2Q8NC44 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC23.18■■□□□ 1.3
RETREG2Q8NC44 AC245052.3-201ENST00000450182 901 ntBASIC23.18■■□□□ 1.3
RETREG2Q8NC44 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC23.18■■□□□ 1.3
RETREG2Q8NC44 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC23.18■■□□□ 1.3
RETREG2Q8NC44 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC23.18■■□□□ 1.3
RETREG2Q8NC44 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC23.18■■□□□ 1.3
RETREG2Q8NC44 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC23.18■■□□□ 1.3
RETREG2Q8NC44 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC23.18■■□□□ 1.3
RETREG2Q8NC44 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RETREG2Q8NC44 STX5-203ENST00000394690 1568 ntTSL 5 BASIC23.18■■□□□ 1.3
RETREG2Q8NC44 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC23.18■■□□□ 1.3
RETREG2Q8NC44 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
RETREG2Q8NC44 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RETREG2Q8NC44 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RETREG2Q8NC44 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RETREG2Q8NC44 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC23.17■■□□□ 1.3
RETREG2Q8NC44 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
RETREG2Q8NC44 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC23.17■■□□□ 1.3
RETREG2Q8NC44 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC23.17■■□□□ 1.3
RETREG2Q8NC44 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC23.17■■□□□ 1.3
RETREG2Q8NC44 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC23.17■■□□□ 1.3
RETREG2Q8NC44 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
RETREG2Q8NC44 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC23.17■■□□□ 1.3
RETREG2Q8NC44 CD44-222ENST00000526025 1052 ntTSL 2 BASIC23.17■■□□□ 1.3
RETREG2Q8NC44 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC23.17■■□□□ 1.3
RETREG2Q8NC44 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC23.17■■□□□ 1.3
RETREG2Q8NC44 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC23.17■■□□□ 1.3
RETREG2Q8NC44 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC23.17■■□□□ 1.3
RETREG2Q8NC44 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RETREG2Q8NC44 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
RETREG2Q8NC44 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
RETREG2Q8NC44 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
RETREG2Q8NC44 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC23.17■■□□□ 1.3
RETREG2Q8NC44 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
RETREG2Q8NC44 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
RETREG2Q8NC44 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
RETREG2Q8NC44 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC23.16■■□□□ 1.3
RETREG2Q8NC44 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC23.16■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms