Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC28AQ8IWP9 AC018470.1-201ENST00000624790 3129 ntBASIC17.1■□□□□ 0.33
CCDC28AQ8IWP9 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC17.1■□□□□ 0.33
CCDC28AQ8IWP9 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC28AQ8IWP9 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.1■□□□□ 0.33
CCDC28AQ8IWP9 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC17.1■□□□□ 0.33
CCDC28AQ8IWP9 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC28AQ8IWP9 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC17.1■□□□□ 0.33
CCDC28AQ8IWP9 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC28AQ8IWP9 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CCDC28AQ8IWP9 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC28AQ8IWP9 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC28AQ8IWP9 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC28AQ8IWP9 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC28AQ8IWP9 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC28AQ8IWP9 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
CCDC28AQ8IWP9 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC28AQ8IWP9 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC17.09■□□□□ 0.33
CCDC28AQ8IWP9 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC28AQ8IWP9 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC28AQ8IWP9 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC28AQ8IWP9 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC28AQ8IWP9 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC28AQ8IWP9 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
CCDC28AQ8IWP9 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC17.09■□□□□ 0.33
CCDC28AQ8IWP9 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC28AQ8IWP9 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
CCDC28AQ8IWP9 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC17.09■□□□□ 0.33
CCDC28AQ8IWP9 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC28AQ8IWP9 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
CCDC28AQ8IWP9 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
CCDC28AQ8IWP9 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC28AQ8IWP9 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC28AQ8IWP9 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC28AQ8IWP9 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC28AQ8IWP9 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC28AQ8IWP9 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC28AQ8IWP9 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC17.09■□□□□ 0.33
CCDC28AQ8IWP9 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC17.09■□□□□ 0.33
CCDC28AQ8IWP9 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC28AQ8IWP9 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CCDC28AQ8IWP9 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC28AQ8IWP9 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC28AQ8IWP9 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC17.09■□□□□ 0.33
CCDC28AQ8IWP9 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC28AQ8IWP9 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC28AQ8IWP9 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC17.08■□□□□ 0.33
CCDC28AQ8IWP9 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CCDC28AQ8IWP9 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CCDC28AQ8IWP9 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CCDC28AQ8IWP9 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC17.08■□□□□ 0.33
CCDC28AQ8IWP9 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.08■□□□□ 0.33
CCDC28AQ8IWP9 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CCDC28AQ8IWP9 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC17.08■□□□□ 0.33
CCDC28AQ8IWP9 USP39-204ENST00000409766 2033 ntTSL 2 BASIC17.08■□□□□ 0.33
CCDC28AQ8IWP9 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CCDC28AQ8IWP9 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CCDC28AQ8IWP9 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC17.08■□□□□ 0.33
CCDC28AQ8IWP9 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CCDC28AQ8IWP9 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CCDC28AQ8IWP9 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC28AQ8IWP9 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC17.08■□□□□ 0.32
CCDC28AQ8IWP9 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
CCDC28AQ8IWP9 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
CCDC28AQ8IWP9 STK32C-205ENST00000456004 607 ntTSL 2 BASIC17.08■□□□□ 0.32
CCDC28AQ8IWP9 AC104581.1-202ENST00000635932 2618 ntBASIC17.08■□□□□ 0.32
CCDC28AQ8IWP9 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC17.08■□□□□ 0.32
CCDC28AQ8IWP9 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC28AQ8IWP9 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC28AQ8IWP9 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
CCDC28AQ8IWP9 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC28AQ8IWP9 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC17.08■□□□□ 0.32
CCDC28AQ8IWP9 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC28AQ8IWP9 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC28AQ8IWP9 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
CCDC28AQ8IWP9 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC28AQ8IWP9 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.07■□□□□ 0.32
CCDC28AQ8IWP9 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
CCDC28AQ8IWP9 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC28AQ8IWP9 AC144652.1-201ENST00000609974 1624 ntBASIC17.07■□□□□ 0.32
CCDC28AQ8IWP9 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC28AQ8IWP9 AC139795.1-202ENST00000500444 432 ntBASIC17.07■□□□□ 0.32
CCDC28AQ8IWP9 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC28AQ8IWP9 AC129492.7-201ENST00000622992 756 ntBASIC17.07■□□□□ 0.32
CCDC28AQ8IWP9 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
CCDC28AQ8IWP9 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC28AQ8IWP9 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
CCDC28AQ8IWP9 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC17.07■□□□□ 0.32
CCDC28AQ8IWP9 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC28AQ8IWP9 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC28AQ8IWP9 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC28AQ8IWP9 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC28AQ8IWP9 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
CCDC28AQ8IWP9 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.07■□□□□ 0.32
CCDC28AQ8IWP9 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC28AQ8IWP9 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC28AQ8IWP9 AC099398.1-201ENST00000567919 2776 ntBASIC17.06■□□□□ 0.32
CCDC28AQ8IWP9 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC28AQ8IWP9 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
CCDC28AQ8IWP9 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms