Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00643Q86TS7 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC12.88□□□□□ -0.35
LINC00643Q86TS7 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00643Q86TS7 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00643Q86TS7 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00643Q86TS7 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00643Q86TS7 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC12.88□□□□□ -0.35
LINC00643Q86TS7 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00643Q86TS7 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00643Q86TS7 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00643Q86TS7 DET1-207ENST00000564406 2315 ntTSL 2 BASIC12.88□□□□□ -0.35
LINC00643Q86TS7 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00643Q86TS7 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00643Q86TS7 AC006077.2-201ENST00000623591 457 ntBASIC12.88□□□□□ -0.35
LINC00643Q86TS7 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC12.88□□□□□ -0.35
LINC00643Q86TS7 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC12.88□□□□□ -0.35
LINC00643Q86TS7 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00643Q86TS7 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC12.88□□□□□ -0.35
LINC00643Q86TS7 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00643Q86TS7 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00643Q86TS7 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00643Q86TS7 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00643Q86TS7 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00643Q86TS7 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00643Q86TS7 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00643Q86TS7 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00643Q86TS7 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00643Q86TS7 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00643Q86TS7 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00643Q86TS7 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00643Q86TS7 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00643Q86TS7 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00643Q86TS7 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00643Q86TS7 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
LINC00643Q86TS7 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC12.87□□□□□ -0.35
LINC00643Q86TS7 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
LINC00643Q86TS7 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC12.87□□□□□ -0.35
LINC00643Q86TS7 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
LINC00643Q86TS7 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
LINC00643Q86TS7 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
LINC00643Q86TS7 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC12.87□□□□□ -0.35
LINC00643Q86TS7 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
LINC00643Q86TS7 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
LINC00643Q86TS7 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
LINC00643Q86TS7 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC12.87□□□□□ -0.35
LINC00643Q86TS7 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
LINC00643Q86TS7 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
LINC00643Q86TS7 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
LINC00643Q86TS7 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC12.87□□□□□ -0.35
LINC00643Q86TS7 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
LINC00643Q86TS7 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
LINC00643Q86TS7 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC12.87□□□□□ -0.35
LINC00643Q86TS7 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
LINC00643Q86TS7 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
LINC00643Q86TS7 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
LINC00643Q86TS7 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
LINC00643Q86TS7 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC12.87□□□□□ -0.35
LINC00643Q86TS7 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
LINC00643Q86TS7 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC12.87□□□□□ -0.35
LINC00643Q86TS7 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC12.87□□□□□ -0.35
LINC00643Q86TS7 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC12.87□□□□□ -0.35
LINC00643Q86TS7 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
LINC00643Q86TS7 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
LINC00643Q86TS7 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
LINC00643Q86TS7 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
LINC00643Q86TS7 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
LINC00643Q86TS7 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC12.87□□□□□ -0.35
LINC00643Q86TS7 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
LINC00643Q86TS7 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
LINC00643Q86TS7 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
LINC00643Q86TS7 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
LINC00643Q86TS7 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC12.86□□□□□ -0.35
LINC00643Q86TS7 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
LINC00643Q86TS7 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
LINC00643Q86TS7 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC12.86□□□□□ -0.35
LINC00643Q86TS7 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
LINC00643Q86TS7 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC12.86□□□□□ -0.35
LINC00643Q86TS7 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
LINC00643Q86TS7 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
LINC00643Q86TS7 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
LINC00643Q86TS7 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC12.86□□□□□ -0.35
LINC00643Q86TS7 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC12.86□□□□□ -0.35
LINC00643Q86TS7 LINC01960-201ENST00000563759 1884 ntBASIC12.86□□□□□ -0.35
LINC00643Q86TS7 C17orf82-201ENST00000623772 1530 ntBASIC12.86□□□□□ -0.35
LINC00643Q86TS7 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
LINC00643Q86TS7 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
LINC00643Q86TS7 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC12.86□□□□□ -0.35
LINC00643Q86TS7 AL512408.1-201ENST00000569378 2000 ntBASIC12.86□□□□□ -0.35
LINC00643Q86TS7 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
LINC00643Q86TS7 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
LINC00643Q86TS7 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
LINC00643Q86TS7 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
LINC00643Q86TS7 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
LINC00643Q86TS7 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
LINC00643Q86TS7 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
LINC00643Q86TS7 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
LINC00643Q86TS7 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC12.85□□□□□ -0.35
LINC00643Q86TS7 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
LINC00643Q86TS7 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
LINC00643Q86TS7 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms