Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC19.48■□□□□ 0.71
LIM2P55344 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIM2P55344 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIM2P55344 SAPCD2P1-201ENST00000395413 1184 ntBASIC19.48■□□□□ 0.71
LIM2P55344 AC026185.1-201ENST00000445748 174 ntBASIC19.48■□□□□ 0.71
LIM2P55344 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
LIM2P55344 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC19.48■□□□□ 0.71
LIM2P55344 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIM2P55344 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC19.48■□□□□ 0.71
LIM2P55344 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC19.48■□□□□ 0.71
LIM2P55344 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
LIM2P55344 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIM2P55344 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC19.48■□□□□ 0.71
LIM2P55344 LINC01521-201ENST00000504184 1943 ntBASIC19.48■□□□□ 0.71
LIM2P55344 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
LIM2P55344 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
LIM2P55344 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC19.48■□□□□ 0.71
LIM2P55344 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC19.48■□□□□ 0.71
LIM2P55344 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC19.48■□□□□ 0.71
LIM2P55344 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIM2P55344 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
LIM2P55344 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.47■□□□□ 0.71
LIM2P55344 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC19.47■□□□□ 0.71
LIM2P55344 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIM2P55344 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC19.47■□□□□ 0.71
LIM2P55344 AC006128.1-201ENST00000624704 1661 ntBASIC19.47■□□□□ 0.71
LIM2P55344 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
LIM2P55344 APTR-203ENST00000430801 583 ntTSL 5 BASIC19.47■□□□□ 0.71
LIM2P55344 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC19.47■□□□□ 0.71
LIM2P55344 AC016405.3-201ENST00000607710 860 ntBASIC19.47■□□□□ 0.71
LIM2P55344 FAM21FP-204ENST00000608637 956 ntBASIC19.47■□□□□ 0.71
LIM2P55344 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC19.47■□□□□ 0.71
LIM2P55344 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC19.47■□□□□ 0.71
LIM2P55344 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIM2P55344 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC19.47■□□□□ 0.71
LIM2P55344 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIM2P55344 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIM2P55344 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.47■□□□□ 0.71
LIM2P55344 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC19.46■□□□□ 0.71
LIM2P55344 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC19.46■□□□□ 0.71
LIM2P55344 CYP2T1P-201ENST00000432607 1285 ntBASIC19.46■□□□□ 0.71
LIM2P55344 PBX1-209ENST00000485769 834 ntTSL 2 BASIC19.46■□□□□ 0.71
LIM2P55344 CASP6-205ENST00000505486 538 ntTSL 4 BASIC19.46■□□□□ 0.71
LIM2P55344 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC19.46■□□□□ 0.71
LIM2P55344 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
LIM2P55344 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
LIM2P55344 AC005181.1-201ENST00000604782 1256 ntBASIC19.46■□□□□ 0.71
LIM2P55344 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIM2P55344 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC19.46■□□□□ 0.71
LIM2P55344 LINC01006-201ENST00000333319 2292 ntBASIC19.46■□□□□ 0.71
LIM2P55344 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
LIM2P55344 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIM2P55344 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIM2P55344 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIM2P55344 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIM2P55344 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIM2P55344 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
LIM2P55344 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC19.46■□□□□ 0.71
LIM2P55344 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC19.46■□□□□ 0.71
LIM2P55344 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
LIM2P55344 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
LIM2P55344 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIM2P55344 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
LIM2P55344 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIM2P55344 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIM2P55344 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC19.45■□□□□ 0.7
LIM2P55344 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
LIM2P55344 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC19.45■□□□□ 0.7
LIM2P55344 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC19.45■□□□□ 0.7
LIM2P55344 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC19.45■□□□□ 0.7
LIM2P55344 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC19.45■□□□□ 0.7
LIM2P55344 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC19.45■□□□□ 0.7
LIM2P55344 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIM2P55344 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
LIM2P55344 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
LIM2P55344 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIM2P55344 STAC-204ENST00000457375 1366 ntTSL 2 BASIC19.44■□□□□ 0.7
LIM2P55344 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC19.44■□□□□ 0.7
LIM2P55344 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
LIM2P55344 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC19.44■□□□□ 0.7
LIM2P55344 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC19.44■□□□□ 0.7
LIM2P55344 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
LIM2P55344 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC19.44■□□□□ 0.7
LIM2P55344 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC19.44■□□□□ 0.7
LIM2P55344 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIM2P55344 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIM2P55344 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIM2P55344 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIM2P55344 BET1L-204ENST00000410108 637 ntTSL 3 BASIC19.44■□□□□ 0.7
LIM2P55344 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIM2P55344 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC19.44■□□□□ 0.7
LIM2P55344 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
LIM2P55344 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC19.44■□□□□ 0.7
LIM2P55344 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
LIM2P55344 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.44■□□□□ 0.7
LIM2P55344 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
LIM2P55344 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIM2P55344 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC19.43■□□□□ 0.7
LIM2P55344 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIM2P55344 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms