Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CXCL12P48061 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CXCL12P48061 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC20.6■□□□□ 0.89
CXCL12P48061 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
CXCL12P48061 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CXCL12P48061 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CXCL12P48061 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
CXCL12P48061 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
CXCL12P48061 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CXCL12P48061 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CXCL12P48061 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.59■□□□□ 0.89
CXCL12P48061 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CXCL12P48061 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CXCL12P48061 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CXCL12P48061 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
CXCL12P48061 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC20.59■□□□□ 0.89
CXCL12P48061 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CXCL12P48061 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
CXCL12P48061 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
CXCL12P48061 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CXCL12P48061 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
CXCL12P48061 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
CXCL12P48061 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CXCL12P48061 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CXCL12P48061 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CXCL12P48061 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CXCL12P48061 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CXCL12P48061 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.58■□□□□ 0.89
CXCL12P48061 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC20.58■□□□□ 0.89
CXCL12P48061 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CXCL12P48061 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC20.58■□□□□ 0.89
CXCL12P48061 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC20.58■□□□□ 0.89
CXCL12P48061 AL353708.3-201ENST00000610272 989 ntBASIC20.58■□□□□ 0.89
CXCL12P48061 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CXCL12P48061 MOK-233ENST00000524214 1539 ntTSL 2 BASIC20.58■□□□□ 0.88
CXCL12P48061 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC20.57■□□□□ 0.88
CXCL12P48061 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC20.57■□□□□ 0.88
CXCL12P48061 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC20.57■□□□□ 0.88
CXCL12P48061 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC20.57■□□□□ 0.88
CXCL12P48061 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.88
CXCL12P48061 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.88
CXCL12P48061 AP003071.4-201ENST00000562276 1284 ntBASIC20.57■□□□□ 0.88
CXCL12P48061 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
CXCL12P48061 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CXCL12P48061 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
CXCL12P48061 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CXCL12P48061 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
CXCL12P48061 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
CXCL12P48061 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC20.57■□□□□ 0.88
CXCL12P48061 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CXCL12P48061 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CXCL12P48061 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
CXCL12P48061 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC20.57■□□□□ 0.88
CXCL12P48061 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CXCL12P48061 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC20.56■□□□□ 0.88
CXCL12P48061 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC20.56■□□□□ 0.88
CXCL12P48061 AC080038.3-201ENST00000623346 1952 ntBASIC20.56■□□□□ 0.88
CXCL12P48061 MMP23A-201ENST00000234610 1017 ntBASIC20.56■□□□□ 0.88
CXCL12P48061 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CXCL12P48061 SAPCD2P4-201ENST00000424595 1171 ntBASIC20.56■□□□□ 0.88
CXCL12P48061 AL355355.2-201ENST00000442321 338 ntBASIC20.56■□□□□ 0.88
CXCL12P48061 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC20.56■□□□□ 0.88
CXCL12P48061 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CXCL12P48061 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC20.56■□□□□ 0.88
CXCL12P48061 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC20.56■□□□□ 0.88
CXCL12P48061 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CXCL12P48061 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CXCL12P48061 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CXCL12P48061 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC20.56■□□□□ 0.88
CXCL12P48061 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CXCL12P48061 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CXCL12P48061 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CXCL12P48061 FAM99A-202ENST00000538190 1989 ntBASIC20.55■□□□□ 0.88
CXCL12P48061 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
CXCL12P48061 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC20.55■□□□□ 0.88
CXCL12P48061 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CXCL12P48061 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC20.55■□□□□ 0.88
CXCL12P48061 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CXCL12P48061 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC20.55■□□□□ 0.88
CXCL12P48061 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CXCL12P48061 RN7SL850P-201ENST00000579959 291 ntBASIC20.55■□□□□ 0.88
CXCL12P48061 NT5C-211ENST00000582170 653 ntTSL 3 BASIC20.55■□□□□ 0.88
CXCL12P48061 AL356652.1-201ENST00000615962 565 ntBASIC20.55■□□□□ 0.88
CXCL12P48061 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CXCL12P48061 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CXCL12P48061 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
CXCL12P48061 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC20.55■□□□□ 0.88
CXCL12P48061 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CXCL12P48061 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CXCL12P48061 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CXCL12P48061 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
CXCL12P48061 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CXCL12P48061 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CXCL12P48061 ARMC10P1-201ENST00000313754 855 ntBASIC20.54■□□□□ 0.88
CXCL12P48061 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CXCL12P48061 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC20.54■□□□□ 0.88
CXCL12P48061 KRT18P35-201ENST00000510488 1269 ntBASIC20.54■□□□□ 0.88
CXCL12P48061 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CXCL12P48061 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CXCL12P48061 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms