Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
CIITAP33076 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC23.19■■□□□ 1.3
CIITAP33076 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CIITAP33076 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CIITAP33076 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
CIITAP33076 LSM12P1-201ENST00000411836 588 ntBASIC23.19■■□□□ 1.3
CIITAP33076 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CIITAP33076 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC23.19■■□□□ 1.3
CIITAP33076 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CIITAP33076 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC23.19■■□□□ 1.3
CIITAP33076 AC091874.3-201ENST00000512672 1195 ntBASIC23.19■■□□□ 1.3
CIITAP33076 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC23.19■■□□□ 1.3
CIITAP33076 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CIITAP33076 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC23.19■■□□□ 1.3
CIITAP33076 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC23.19■■□□□ 1.3
CIITAP33076 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
CIITAP33076 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
CIITAP33076 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
CIITAP33076 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
CIITAP33076 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CIITAP33076 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CIITAP33076 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CIITAP33076 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
CIITAP33076 PGM5P4-201ENST00000421970 445 ntBASIC23.18■■□□□ 1.3
CIITAP33076 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC23.18■■□□□ 1.3
CIITAP33076 KLF13-207ENST00000560473 489 ntTSL 3 BASIC23.18■■□□□ 1.3
CIITAP33076 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CIITAP33076 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC23.18■■□□□ 1.3
CIITAP33076 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CIITAP33076 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
CIITAP33076 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
CIITAP33076 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC23.18■■□□□ 1.3
CIITAP33076 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC23.18■■□□□ 1.3
CIITAP33076 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CIITAP33076 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC23.17■■□□□ 1.3
CIITAP33076 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC23.17■■□□□ 1.3
CIITAP33076 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC23.17■■□□□ 1.3
CIITAP33076 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CIITAP33076 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CIITAP33076 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC23.17■■□□□ 1.3
CIITAP33076 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC23.17■■□□□ 1.3
CIITAP33076 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CIITAP33076 AL356652.1-201ENST00000615962 565 ntBASIC23.17■■□□□ 1.3
CIITAP33076 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC23.17■■□□□ 1.3
CIITAP33076 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC23.16■■□□□ 1.3
CIITAP33076 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CIITAP33076 AC006128.1-201ENST00000624704 1661 ntBASIC23.16■■□□□ 1.3
CIITAP33076 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CIITAP33076 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
CIITAP33076 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.3
CIITAP33076 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CIITAP33076 DUSP5P2-201ENST00000426873 1033 ntBASIC23.16■■□□□ 1.3
CIITAP33076 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
CIITAP33076 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC23.16■■□□□ 1.3
CIITAP33076 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC23.16■■□□□ 1.3
CIITAP33076 APTR-205ENST00000447009 902 ntTSL 2 BASIC23.16■■□□□ 1.3
CIITAP33076 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC23.16■■□□□ 1.3
CIITAP33076 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC23.16■■□□□ 1.3
CIITAP33076 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CIITAP33076 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC23.16■■□□□ 1.3
CIITAP33076 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC23.15■■□□□ 1.3
CIITAP33076 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC23.15■■□□□ 1.3
CIITAP33076 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC23.15■■□□□ 1.3
CIITAP33076 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CIITAP33076 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC23.15■■□□□ 1.3
CIITAP33076 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CIITAP33076 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC23.15■■□□□ 1.3
CIITAP33076 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC23.15■■□□□ 1.3
CIITAP33076 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CIITAP33076 OR2A1-AS1-201ENST00000462305 773 ntBASIC23.15■■□□□ 1.3
CIITAP33076 RHEB-204ENST00000472642 900 ntTSL 3 BASIC23.15■■□□□ 1.3
CIITAP33076 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC23.15■■□□□ 1.3
CIITAP33076 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC23.15■■□□□ 1.3
CIITAP33076 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CIITAP33076 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CIITAP33076 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC23.15■■□□□ 1.3
CIITAP33076 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC23.15■■□□□ 1.3
CIITAP33076 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC23.15■■□□□ 1.3
CIITAP33076 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CIITAP33076 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC23.15■■□□□ 1.3
CIITAP33076 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
CIITAP33076 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC23.14■■□□□ 1.3
CIITAP33076 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC23.14■■□□□ 1.3
CIITAP33076 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.3
CIITAP33076 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC23.14■■□□□ 1.29
CIITAP33076 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.29
CIITAP33076 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC23.14■■□□□ 1.29
CIITAP33076 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
CIITAP33076 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC23.14■■□□□ 1.29
CIITAP33076 BET1L-207ENST00000529614 560 ntTSL 5 BASIC23.14■■□□□ 1.29
CIITAP33076 AC083880.1-201ENST00000608266 535 ntBASIC23.14■■□□□ 1.29
CIITAP33076 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
CIITAP33076 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
CIITAP33076 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC23.14■■□□□ 1.29
CIITAP33076 KRT8P36-201ENST00000489121 1440 ntBASIC23.14■■□□□ 1.29
CIITAP33076 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
CIITAP33076 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
CIITAP33076 PALM-208ENST00000592155 2272 ntTSL 4 BASIC23.13■■□□□ 1.29
CIITAP33076 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CIITAP33076 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms