Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC069236.1-201ENST00000604339 616 ntBASIC20.4■□□□□ 0.86
MSH3P20585 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
MSH3P20585 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
MSH3P20585 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
MSH3P20585 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.4■□□□□ 0.86
MSH3P20585 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
MSH3P20585 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
MSH3P20585 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
MSH3P20585 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC20.39■□□□□ 0.85
MSH3P20585 SAPCD2P1-201ENST00000395413 1184 ntBASIC20.39■□□□□ 0.85
MSH3P20585 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
MSH3P20585 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
MSH3P20585 AC016405.3-201ENST00000607710 860 ntBASIC20.39■□□□□ 0.85
MSH3P20585 FAM21FP-204ENST00000608637 956 ntBASIC20.39■□□□□ 0.85
MSH3P20585 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC20.39■□□□□ 0.85
MSH3P20585 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
MSH3P20585 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.85
MSH3P20585 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MSH3P20585 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC20.38■□□□□ 0.85
MSH3P20585 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MSH3P20585 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.38■□□□□ 0.85
MSH3P20585 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
MSH3P20585 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.38■□□□□ 0.85
MSH3P20585 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC20.38■□□□□ 0.85
MSH3P20585 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC20.38■□□□□ 0.85
MSH3P20585 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
MSH3P20585 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MSH3P20585 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
MSH3P20585 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC20.38■□□□□ 0.85
MSH3P20585 CROCCP5-201ENST00000436658 830 ntBASIC20.38■□□□□ 0.85
MSH3P20585 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
MSH3P20585 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC20.38■□□□□ 0.85
MSH3P20585 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
MSH3P20585 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC20.38■□□□□ 0.85
MSH3P20585 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MSH3P20585 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MSH3P20585 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MSH3P20585 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
MSH3P20585 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
MSH3P20585 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
MSH3P20585 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MSH3P20585 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MSH3P20585 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC20.37■□□□□ 0.85
MSH3P20585 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
MSH3P20585 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MSH3P20585 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MSH3P20585 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MSH3P20585 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
MSH3P20585 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MSH3P20585 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MSH3P20585 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
MSH3P20585 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
MSH3P20585 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC20.37■□□□□ 0.85
MSH3P20585 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC20.37■□□□□ 0.85
MSH3P20585 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
MSH3P20585 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC20.37■□□□□ 0.85
MSH3P20585 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.36■□□□□ 0.85
MSH3P20585 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC20.36■□□□□ 0.85
MSH3P20585 RARRES2P4-201ENST00000514074 484 ntBASIC20.36■□□□□ 0.85
MSH3P20585 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
MSH3P20585 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
MSH3P20585 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
MSH3P20585 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
MSH3P20585 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC20.36■□□□□ 0.85
MSH3P20585 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
MSH3P20585 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
MSH3P20585 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
MSH3P20585 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC20.35■□□□□ 0.85
MSH3P20585 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
MSH3P20585 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
MSH3P20585 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
MSH3P20585 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
MSH3P20585 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
MSH3P20585 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC20.35■□□□□ 0.85
MSH3P20585 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC20.35■□□□□ 0.85
MSH3P20585 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
MSH3P20585 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
MSH3P20585 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
MSH3P20585 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC20.35■□□□□ 0.85
MSH3P20585 PPP1R14BP3-201ENST00000509033 445 ntBASIC20.35■□□□□ 0.85
MSH3P20585 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC20.35■□□□□ 0.85
MSH3P20585 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
MSH3P20585 OR10C1-204ENST00000622521 1039 ntBASIC20.35■□□□□ 0.85
MSH3P20585 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
MSH3P20585 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
MSH3P20585 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
MSH3P20585 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
MSH3P20585 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
MSH3P20585 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20.34■□□□□ 0.85
MSH3P20585 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC20.34■□□□□ 0.85
MSH3P20585 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
MSH3P20585 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.34■□□□□ 0.85
MSH3P20585 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
MSH3P20585 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC20.34■□□□□ 0.85
MSH3P20585 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC20.34■□□□□ 0.85
MSH3P20585 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
MSH3P20585 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
MSH3P20585 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC20.34■□□□□ 0.85
MSH3P20585 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
MSH3P20585 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms