Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC19.56■□□□□ 0.72
SDC1P18827 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SDC1P18827 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SDC1P18827 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SDC1P18827 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC19.55■□□□□ 0.72
SDC1P18827 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC19.55■□□□□ 0.72
SDC1P18827 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SDC1P18827 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SDC1P18827 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
SDC1P18827 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SDC1P18827 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
SDC1P18827 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC19.55■□□□□ 0.72
SDC1P18827 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC19.55■□□□□ 0.72
SDC1P18827 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SDC1P18827 PCDHAC2-203ENST00000615316 3011 ntBASIC19.55■□□□□ 0.72
SDC1P18827 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SDC1P18827 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SDC1P18827 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SDC1P18827 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.55■□□□□ 0.72
SDC1P18827 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
SDC1P18827 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.54■□□□□ 0.72
SDC1P18827 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SDC1P18827 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC19.54■□□□□ 0.72
SDC1P18827 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19.54■□□□□ 0.72
SDC1P18827 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.54■□□□□ 0.72
SDC1P18827 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SDC1P18827 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC19.54■□□□□ 0.72
SDC1P18827 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.54■□□□□ 0.72
SDC1P18827 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SDC1P18827 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
SDC1P18827 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SDC1P18827 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SDC1P18827 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC19.54■□□□□ 0.72
SDC1P18827 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SDC1P18827 AC092720.2-201ENST00000602388 1665 ntBASIC19.54■□□□□ 0.72
SDC1P18827 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
SDC1P18827 USP39-204ENST00000409766 2033 ntTSL 2 BASIC19.54■□□□□ 0.72
SDC1P18827 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC19.54■□□□□ 0.72
SDC1P18827 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SDC1P18827 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SDC1P18827 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.53■□□□□ 0.72
SDC1P18827 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SDC1P18827 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
SDC1P18827 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SDC1P18827 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.53■□□□□ 0.72
SDC1P18827 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SDC1P18827 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SDC1P18827 KRT18P61-201ENST00000585825 1298 ntBASIC19.53■□□□□ 0.72
SDC1P18827 MIR2861-201ENST00000636310 90 ntBASIC19.53■□□□□ 0.72
SDC1P18827 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SDC1P18827 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
SDC1P18827 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SDC1P18827 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SDC1P18827 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC19.53■□□□□ 0.72
SDC1P18827 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SDC1P18827 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SDC1P18827 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
SDC1P18827 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
SDC1P18827 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
SDC1P18827 RBM17P2-201ENST00000616397 1405 ntBASIC19.52■□□□□ 0.72
SDC1P18827 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SDC1P18827 AC112907.3-201ENST00000577781 2400 ntBASIC19.52■□□□□ 0.72
SDC1P18827 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
SDC1P18827 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC19.52■□□□□ 0.72
SDC1P18827 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SDC1P18827 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
SDC1P18827 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SDC1P18827 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC19.52■□□□□ 0.72
SDC1P18827 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SDC1P18827 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC19.52■□□□□ 0.72
SDC1P18827 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC19.52■□□□□ 0.72
SDC1P18827 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC19.52■□□□□ 0.72
SDC1P18827 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC19.52■□□□□ 0.72
SDC1P18827 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SDC1P18827 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.52■□□□□ 0.72
SDC1P18827 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC19.52■□□□□ 0.72
SDC1P18827 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.52■□□□□ 0.72
SDC1P18827 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
SDC1P18827 AC099778.1-201ENST00000568593 1911 ntBASIC19.52■□□□□ 0.72
SDC1P18827 ME2-218ENST00000640965 2476 ntTSL 5 BASIC19.52■□□□□ 0.72
SDC1P18827 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
SDC1P18827 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.71
SDC1P18827 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
SDC1P18827 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
SDC1P18827 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
SDC1P18827 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.52■□□□□ 0.71
SDC1P18827 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.71
SDC1P18827 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC19.51■□□□□ 0.71
SDC1P18827 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SDC1P18827 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC19.51■□□□□ 0.71
SDC1P18827 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SDC1P18827 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC19.51■□□□□ 0.71
SDC1P18827 ADM-207ENST00000530439 1839 ntTSL 2 BASIC19.51■□□□□ 0.71
SDC1P18827 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.51■□□□□ 0.71
SDC1P18827 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SDC1P18827 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SDC1P18827 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC19.51■□□□□ 0.71
SDC1P18827 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC19.51■□□□□ 0.71
SDC1P18827 AC091799.1-201ENST00000422823 811 ntBASIC19.51■□□□□ 0.71
SDC1P18827 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms