Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 FGFRL1-202ENST00000398484 3639 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.244e-8■■■□□ 17
YBX3P16989 ELOVL2-201ENST00000354666 3997 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.711e-10■■■□□ 17
YBX3P16989 TUBA4A-208ENST00000462806 804 ntTSL 217.07■□□□□ 0.321e-6■■■□□ 17
YBX3P16989 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.745e-11■■■□□ 17
YBX3P16989 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC19.64■□□□□ 0.735e-11■■■□□ 17
YBX3P16989 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.685e-11■■■□□ 17
YBX3P16989 KRT8-213ENST00000550170 2202 ntTSL 518.3■□□□□ 0.525e-11■■■□□ 17
YBX3P16989 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.135e-11■■■□□ 17
YBX3P16989 KRT8-203ENST00000546583 2862 ntTSL 515.39■□□□□ 0.055e-11■■■□□ 17
YBX3P16989 ARID1B-211ENST00000635928 1551 ntTSL 516.09■□□□□ 0.172e-6■■■□□ 17
YBX3P16989 ARID1B-215ENST00000636254 3848 ntTSL 58.22□□□□□ -1.092e-6■■■□□ 17
YBX3P16989 ARID1B-234ENST00000637933 5043 nt7.85□□□□□ -1.152e-6■■■□□ 17
YBX3P16989 FADS1-205ENST00000448607 559 ntTSL 416.64■□□□□ 0.253e-13■■■□□ 17
YBX3P16989 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.574e-7■■■□□ 17
YBX3P16989 PRKCB-210ENST00000498739 569 ntTSL 421.41■■□□□ 1.029e-9■■■□□ 17
YBX3P16989 RAP1B-206ENST00000425247 855 ntTSL 526.25■■□□□ 1.793e-11■■■□□ 17
YBX3P16989 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC26.92■■□□□ 1.91e-6■■■□□ 17
YBX3P16989 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.521e-6■■■□□ 17
YBX3P16989 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC22.12■■□□□ 1.131e-6■■■□□ 17
YBX3P16989 HSD17B10-204ENST00000477706 556 ntTSL 314.1□□□□□ -0.151e-6■■■□□ 17
YBX3P16989 ATXN10-207ENST00000470722 391 ntTSL 35.5□□□□□ -1.532e-11■■■□□ 17
YBX3P16989 HMBOX1-207ENST00000519662 811 ntTSL 414.11□□□□□ -0.156e-14■■■□□ 17
YBX3P16989 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.663e-9■■■□□ 17
YBX3P16989 RBM17-205ENST00000446108 3751 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.623e-9■■■□□ 17
YBX3P16989 NSFL1C-213ENST00000555944 2588 ntTSL 218.97■□□□□ 0.635e-7■■■□□ 17
YBX3P16989 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC18.15■□□□□ 0.55e-7■■■□□ 17
YBX3P16989 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC17.52■□□□□ 0.395e-7■■■□□ 17
YBX3P16989 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.235e-7■■■□□ 17
YBX3P16989 NSFL1C-204ENST00000461211 3799 ntTSL 57.25□□□□□ -1.255e-7■■■□□ 17
YBX3P16989 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.772e-6■■■□□ 17
YBX3P16989 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.034e-7■■■□□ 16.9
YBX3P16989 SPTB-204ENST00000389722 10063 ntTSL 2 BASIC11.35□□□□□ -0.591e-6■■■□□ 16.9
YBX3P16989 SPTB-208ENST00000556626 10153 ntTSL 1 (best) BASIC10.86□□□□□ -0.671e-6■■■□□ 16.9
YBX3P16989 RGS10-203ENST00000392865 852 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.315e-8■■■□□ 16.9
YBX3P16989 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC7.22□□□□□ -1.255e-8■■■□□ 16.9
YBX3P16989 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.519e-7■■■□□ 16.9
YBX3P16989 PSMD2-205ENST00000435761 2574 ntTSL 2 BASIC12.91□□□□□ -0.344e-11■■■□□ 16.9
YBX3P16989 PSMD2-206ENST00000439383 2633 ntTSL 2 BASIC10.79□□□□□ -0.684e-11■■■□□ 16.9
YBX3P16989 TGM2-201ENST00000361475 5070 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.23e-7■■■□□ 16.9
YBX3P16989 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC28.25■■■□□ 2.111e-6■■■□□ 16.9
YBX3P16989 SYNGR3-203ENST00000563869 860 ntTSL 225.17■■□□□ 1.621e-6■■■□□ 16.9
YBX3P16989 SYNGR3-204ENST00000564642 752 ntTSL 224.05■■□□□ 1.441e-6■■■□□ 16.9
YBX3P16989 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC20.93■□□□□ 0.943e-7■■■□□ 16.9
YBX3P16989 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.533e-7■■■□□ 16.9
YBX3P16989 AC008770.3-203ENST00000591441 677 ntTSL 311.25□□□□□ -0.613e-7■■■□□ 16.9
YBX3P16989 ZNF700-203ENST00000622593 2901 ntAPPRIS ALT2 TSL 4 BASIC10.63□□□□□ -0.713e-7■■■□□ 16.9
YBX3P16989 ZNF700-201ENST00000254321 2882 ntAPPRIS P3 TSL 1 (best) BASIC10.61□□□□□ -0.713e-7■■■□□ 16.9
YBX3P16989 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC6.56□□□□□ -1.363e-7■■■□□ 16.9
YBX3P16989 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC5.09□□□□□ -1.593e-7■■■□□ 16.9
YBX3P16989 MAPK1-201ENST00000215832 11022 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.767e-13■■■□□ 16.9
YBX3P16989 UBE3A-217ENST00000628890 424 ntTSL 37.75□□□□□ -1.173e-8■■■□□ 16.9
YBX3P16989 UBE3A-212ENST00000626589 394 ntTSL 56.17□□□□□ -1.423e-8■■■□□ 16.9
YBX3P16989 SHANK2-207ENST00000425049 557 ntTSL 422.07■■□□□ 1.126e-6■■■□□ 16.9
YBX3P16989 SHANK2-213ENST00000460048 736 ntTSL 521.86■■□□□ 1.096e-6■■■□□ 16.9
YBX3P16989 EPRS-201ENST00000366923 5014 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.247e-8■■■□□ 16.9
YBX3P16989 EPRS-203ENST00000468487 458 ntTSL 25.98□□□□□ -1.454e-14■■■□□ 16.9
YBX3P16989 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC26.57■■□□□ 1.848e-9■■■□□ 16.9
YBX3P16989 ETFB-203ENST00000593992 603 ntTSL 220.51■□□□□ 0.878e-9■■■□□ 16.9
YBX3P16989 RNPS1-206ENST00000562205 2223 ntTSL 216.28■□□□□ 0.21e-7■■■□□ 16.9
YBX3P16989 QARS-249ENST00000637113 1369 ntTSL 519.32■□□□□ 0.689e-12■■■□□ 16.9
YBX3P16989 QARS-250ENST00000637281 1327 ntTSL 59.89□□□□□ -0.839e-12■■■□□ 16.9
YBX3P16989 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC20.38■□□□□ 0.855e-7■■■□□ 16.9
YBX3P16989 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC19.56■□□□□ 0.725e-7■■■□□ 16.9
YBX3P16989 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC19.56■□□□□ 0.725e-7■■■□□ 16.9
YBX3P16989 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC19.35■□□□□ 0.695e-7■■■□□ 16.9
YBX3P16989 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC18.61■□□□□ 0.575e-7■■■□□ 16.9
YBX3P16989 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.415e-7■■■□□ 16.9
YBX3P16989 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.175e-7■■■□□ 16.9
YBX3P16989 ZCCHC17-203ENST00000479629 761 ntTSL 215.04■□□□□ -05e-7■■■□□ 16.9
YBX3P16989 ZCCHC17-209ENST00000627541 1158 ntTSL 5 BASIC9.62□□□□□ -0.875e-7■■■□□ 16.9
YBX3P16989 AL049650.1-201ENST00000461548 823 ntAPPRIS P1 TSL 5 BASIC7.2□□□□□ -1.266e-11■■■□□ 16.9
YBX3P16989 CEP192-209ENST00000511820 6455 ntTSL 1 (best)6.05□□□□□ -1.448e-7■■■□□ 16.9
YBX3P16989 VTI1B-205ENST00000555543 718 ntTSL 226.99■■□□□ 1.912e-6■■■□□ 16.9
YBX3P16989 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC23.39■■□□□ 1.333e-8■■■□□ 16.9
YBX3P16989 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.333e-8■■■□□ 16.9
YBX3P16989 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC23.39■■□□□ 1.333e-8■■■□□ 16.9
YBX3P16989 LAMTOR5-202ENST00000464240 1830 ntTSL 222.98■■□□□ 1.273e-8■■■□□ 16.9
YBX3P16989 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC20.65■□□□□ 0.93e-8■■■□□ 16.9
YBX3P16989 LAMTOR5-203ENST00000474861 1154 ntTSL 2 BASIC15.83■□□□□ 0.123e-8■■■□□ 16.9
YBX3P16989 LAMTOR5-207ENST00000602858 553 ntTSL 2 BASIC6.88□□□□□ -1.313e-8■■■□□ 16.9
YBX3P16989 RHEB-205ENST00000478470 1153 ntTSL 533.8■■■■□ 36e-9■■■□□ 16.9
YBX3P16989 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.036e-9■■■□□ 16.9
YBX3P16989 RHEB-204ENST00000472642 900 ntTSL 3 BASIC27.51■■□□□ 1.996e-9■■■□□ 16.9
YBX3P16989 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.741e-6■■■□□ 16.9
YBX3P16989 ZDHHC18-201ENST00000374141 1002 ntAPPRIS ALT2 TSL 214.88□□□□□ -0.031e-6■■■□□ 16.9
YBX3P16989 ZDHHC18-205ENST00000534643 597 ntAPPRIS ALT2 TSL 410.28□□□□□ -0.761e-6■■■□□ 16.9
YBX3P16989 TFDP1-208ENST00000544902 1571 ntTSL 228.24■■■□□ 2.115e-7■■■□□ 16.9
YBX3P16989 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.035e-7■■■□□ 16.9
YBX3P16989 ARL16-212ENST00000576914 548 ntTSL 314.88□□□□□ -0.031e-6■■■□□ 16.9
YBX3P16989 OIP5-AS1-206ENST00000559368 642 ntTSL 328.13■■■□□ 2.093e-15■■■□□ 16.9
YBX3P16989 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC28.13■■■□□ 2.093e-15■■■□□ 16.9
YBX3P16989 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC19.8■□□□□ 0.763e-15■■■□□ 16.9
YBX3P16989 OIP5-AS1-204ENST00000558457 676 ntTSL 217.93■□□□□ 0.463e-15■■■□□ 16.9
YBX3P16989 OIP5-AS1-207ENST00000560545 566 ntTSL 214.26□□□□□ -0.133e-15■■■□□ 16.9
YBX3P16989 OIP5-AS1-210ENST00000561275 821 ntTSL 312.08□□□□□ -0.483e-15■■■□□ 16.9
YBX3P16989 OIP5-AS1-203ENST00000557993 1482 ntTSL 26.6□□□□□ -1.353e-15■■■□□ 16.9
YBX3P16989 GPSM2-204ENST00000435987 904 ntTSL 327.97■■■□□ 2.074e-6■■■□□ 16.9
YBX3P16989 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.614e-6■■■□□ 16.9
YBX3P16989 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.184e-6■■■□□ 16.9
YBX3P16989 ATP5L-203ENST00000527186 1582 ntTSL 27.37□□□□□ -1.233e-9■■■□□ 16.9
Retrieved 100 of 29,075 protein–RNA pairs in 333.4 ms