Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC21.45■■□□□ 1.02
VCANP13611 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
VCANP13611 COPE-203ENST00000351079 907 ntTSL 2 BASIC21.45■■□□□ 1.02
VCANP13611 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
VCANP13611 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
VCANP13611 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
VCANP13611 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
VCANP13611 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
VCANP13611 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
VCANP13611 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC21.44■■□□□ 1.02
VCANP13611 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
VCANP13611 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
VCANP13611 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC21.44■■□□□ 1.02
VCANP13611 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC21.44■■□□□ 1.02
VCANP13611 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC21.44■■□□□ 1.02
VCANP13611 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC21.44■■□□□ 1.02
VCANP13611 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
VCANP13611 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
VCANP13611 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC21.44■■□□□ 1.02
VCANP13611 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC21.44■■□□□ 1.02
VCANP13611 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
VCANP13611 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
VCANP13611 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC21.44■■□□□ 1.02
VCANP13611 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC21.44■■□□□ 1.02
VCANP13611 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC21.44■■□□□ 1.02
VCANP13611 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
VCANP13611 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
VCANP13611 AK4P3-201ENST00000418260 669 ntBASIC21.43■■□□□ 1.02
VCANP13611 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC21.43■■□□□ 1.02
VCANP13611 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
VCANP13611 CALM1-205ENST00000553542 877 ntTSL 5 BASIC21.43■■□□□ 1.02
VCANP13611 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
VCANP13611 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
VCANP13611 MED17-227ENST00000640521 2047 ntTSL 5 BASIC21.43■■□□□ 1.02
VCANP13611 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC21.43■■□□□ 1.02
VCANP13611 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC21.43■■□□□ 1.02
VCANP13611 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
VCANP13611 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.42■■□□□ 1.02
VCANP13611 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC21.42■■□□□ 1.02
VCANP13611 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC21.42■■□□□ 1.02
VCANP13611 AL353807.1-201ENST00000427475 662 ntBASIC21.42■■□□□ 1.02
VCANP13611 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC21.42■■□□□ 1.02
VCANP13611 AC093458.2-201ENST00000623150 629 ntBASIC21.42■■□□□ 1.02
VCANP13611 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC21.42■■□□□ 1.02
VCANP13611 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
VCANP13611 AC005829.2-201ENST00000571422 1056 ntBASIC21.42■■□□□ 1.02
VCANP13611 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
VCANP13611 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
VCANP13611 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC21.42■■□□□ 1.02
VCANP13611 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC21.42■■□□□ 1.02
VCANP13611 FITM1-202ENST00000559294 800 ntBASIC21.42■■□□□ 1.02
VCANP13611 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
VCANP13611 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.02
VCANP13611 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
VCANP13611 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
VCANP13611 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC21.41■■□□□ 1.02
VCANP13611 FAM21FP-204ENST00000608637 956 ntBASIC21.41■■□□□ 1.02
VCANP13611 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
VCANP13611 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC21.41■■□□□ 1.02
VCANP13611 NAPSB-206ENST00000562112 1266 ntBASIC21.41■■□□□ 1.02
VCANP13611 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
VCANP13611 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
VCANP13611 AC003102.1-202ENST00000563394 1796 ntBASIC21.41■■□□□ 1.02
VCANP13611 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
VCANP13611 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC21.41■■□□□ 1.02
VCANP13611 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC21.4■■□□□ 1.02
VCANP13611 AL671883.3-201ENST00000603274 991 ntBASIC21.4■■□□□ 1.02
VCANP13611 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
VCANP13611 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
VCANP13611 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
VCANP13611 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
VCANP13611 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
VCANP13611 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
VCANP13611 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC21.4■■□□□ 1.02
VCANP13611 AC008175.2-201ENST00000612840 297 ntBASIC21.4■■□□□ 1.02
VCANP13611 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
VCANP13611 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
VCANP13611 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
VCANP13611 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
VCANP13611 PRR31-201ENST00000371629 978 ntTSL 2 BASIC21.4■■□□□ 1.02
VCANP13611 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
VCANP13611 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
VCANP13611 AC124283.5-201ENST00000624661 1809 ntBASIC21.4■■□□□ 1.02
VCANP13611 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC21.39■■□□□ 1.02
VCANP13611 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
VCANP13611 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
VCANP13611 ATP5G1P1-201ENST00000448724 379 ntBASIC21.39■■□□□ 1.02
VCANP13611 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
VCANP13611 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.02
VCANP13611 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
VCANP13611 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
VCANP13611 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
VCANP13611 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
VCANP13611 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
VCANP13611 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
VCANP13611 NXN-202ENST00000537628 1340 ntTSL 3 BASIC21.39■■□□□ 1.01
VCANP13611 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
VCANP13611 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
VCANP13611 ECEL1P2-202ENST00000465689 757 ntBASIC21.39■■□□□ 1.01
VCANP13611 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC21.39■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms