Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CPSF4O95639 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CPSF4O95639 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC19.5■□□□□ 0.71
CPSF4O95639 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CPSF4O95639 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC19.5■□□□□ 0.71
CPSF4O95639 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CPSF4O95639 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
CPSF4O95639 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CPSF4O95639 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
CPSF4O95639 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
CPSF4O95639 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CPSF4O95639 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CPSF4O95639 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CPSF4O95639 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.5■□□□□ 0.71
CPSF4O95639 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CPSF4O95639 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC19.5■□□□□ 0.71
CPSF4O95639 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
CPSF4O95639 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
CPSF4O95639 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
CPSF4O95639 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CPSF4O95639 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC19.49■□□□□ 0.71
CPSF4O95639 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
CPSF4O95639 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CPSF4O95639 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC19.49■□□□□ 0.71
CPSF4O95639 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CPSF4O95639 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CPSF4O95639 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CPSF4O95639 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CPSF4O95639 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.49■□□□□ 0.71
CPSF4O95639 STAC-204ENST00000457375 1366 ntTSL 2 BASIC19.49■□□□□ 0.71
CPSF4O95639 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CPSF4O95639 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CPSF4O95639 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CPSF4O95639 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CPSF4O95639 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
CPSF4O95639 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CPSF4O95639 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CPSF4O95639 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
CPSF4O95639 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
CPSF4O95639 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CPSF4O95639 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CPSF4O95639 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CPSF4O95639 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CPSF4O95639 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
CPSF4O95639 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC19.48■□□□□ 0.71
CPSF4O95639 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC19.48■□□□□ 0.71
CPSF4O95639 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
CPSF4O95639 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CPSF4O95639 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CPSF4O95639 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CPSF4O95639 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CPSF4O95639 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC19.48■□□□□ 0.71
CPSF4O95639 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CPSF4O95639 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CPSF4O95639 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CPSF4O95639 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
CPSF4O95639 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC19.47■□□□□ 0.71
CPSF4O95639 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.47■□□□□ 0.71
CPSF4O95639 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CPSF4O95639 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CPSF4O95639 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CPSF4O95639 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CPSF4O95639 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CPSF4O95639 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC19.47■□□□□ 0.71
CPSF4O95639 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
CPSF4O95639 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CPSF4O95639 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CPSF4O95639 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC19.47■□□□□ 0.71
CPSF4O95639 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CPSF4O95639 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CPSF4O95639 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
CPSF4O95639 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC19.46■□□□□ 0.71
CPSF4O95639 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC19.46■□□□□ 0.71
CPSF4O95639 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC19.46■□□□□ 0.71
CPSF4O95639 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC19.46■□□□□ 0.71
CPSF4O95639 NAA20-201ENST00000310450 920 ntTSL 2 BASIC19.46■□□□□ 0.71
CPSF4O95639 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
CPSF4O95639 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CPSF4O95639 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CPSF4O95639 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC19.46■□□□□ 0.71
CPSF4O95639 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC19.46■□□□□ 0.71
CPSF4O95639 AC138907.5-202ENST00000569484 235 ntBASIC19.46■□□□□ 0.71
CPSF4O95639 AC120498.10-201ENST00000621827 505 ntBASIC19.46■□□□□ 0.71
CPSF4O95639 RARRES2P11-201ENST00000635158 484 ntBASIC19.46■□□□□ 0.71
CPSF4O95639 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CPSF4O95639 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CPSF4O95639 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CPSF4O95639 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC19.46■□□□□ 0.71
CPSF4O95639 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CPSF4O95639 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
CPSF4O95639 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CPSF4O95639 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
CPSF4O95639 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
CPSF4O95639 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC19.45■□□□□ 0.7
CPSF4O95639 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
CPSF4O95639 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CPSF4O95639 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CPSF4O95639 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
CPSF4O95639 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC19.45■□□□□ 0.7
CPSF4O95639 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms