Protein–RNA interactions for Protein: O95628

CNOT4, CCR4-NOT transcription complex subunit 4, humanhuman

Known RBP Predictions only

Length 575 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4O95628 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CNOT4O95628 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CNOT4O95628 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC18.2■□□□□ 0.5
CNOT4O95628 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CNOT4O95628 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC18.2■□□□□ 0.5
CNOT4O95628 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
CNOT4O95628 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC18.2■□□□□ 0.5
CNOT4O95628 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC18.2■□□□□ 0.5
CNOT4O95628 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC18.2■□□□□ 0.5
CNOT4O95628 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CNOT4O95628 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
CNOT4O95628 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CNOT4O95628 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CNOT4O95628 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CNOT4O95628 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CNOT4O95628 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CNOT4O95628 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
CNOT4O95628 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CNOT4O95628 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CNOT4O95628 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CNOT4O95628 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC18.19■□□□□ 0.5
CNOT4O95628 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CNOT4O95628 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CNOT4O95628 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
CNOT4O95628 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CNOT4O95628 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
CNOT4O95628 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC18.19■□□□□ 0.5
CNOT4O95628 FAM201B-201ENST00000458407 597 ntBASIC18.19■□□□□ 0.5
CNOT4O95628 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC18.19■□□□□ 0.5
CNOT4O95628 AL138781.1-201ENST00000566567 1274 ntBASIC18.19■□□□□ 0.5
CNOT4O95628 MIR4758-201ENST00000577688 71 ntBASIC18.19■□□□□ 0.5
CNOT4O95628 AC010980.2-201ENST00000587099 1412 ntBASIC18.19■□□□□ 0.5
CNOT4O95628 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC18.19■□□□□ 0.5
CNOT4O95628 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC18.19■□□□□ 0.5
CNOT4O95628 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC18.19■□□□□ 0.5
CNOT4O95628 MARS-234ENST00000630571 216 ntTSL 5 BASIC18.19■□□□□ 0.5
CNOT4O95628 MARS-235ENST00000630803 183 ntTSL 3 BASIC18.19■□□□□ 0.5
CNOT4O95628 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC18.19■□□□□ 0.5
CNOT4O95628 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
CNOT4O95628 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CNOT4O95628 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CNOT4O95628 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC18.19■□□□□ 0.5
CNOT4O95628 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC18.19■□□□□ 0.5
CNOT4O95628 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC18.19■□□□□ 0.5
CNOT4O95628 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CNOT4O95628 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CNOT4O95628 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC18.19■□□□□ 0.5
CNOT4O95628 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CNOT4O95628 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
CNOT4O95628 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC18.18■□□□□ 0.5
CNOT4O95628 EXOC3-AS1-202ENST00000623673 1663 ntBASIC18.18■□□□□ 0.5
CNOT4O95628 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
CNOT4O95628 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CNOT4O95628 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
CNOT4O95628 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CNOT4O95628 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CNOT4O95628 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC18.18■□□□□ 0.5
CNOT4O95628 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
CNOT4O95628 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CNOT4O95628 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC18.18■□□□□ 0.5
CNOT4O95628 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CNOT4O95628 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC18.17■□□□□ 0.5
CNOT4O95628 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CNOT4O95628 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CNOT4O95628 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC18.17■□□□□ 0.5
CNOT4O95628 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
CNOT4O95628 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
CNOT4O95628 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC18.17■□□□□ 0.5
CNOT4O95628 ISCU-212ENST00000547005 795 ntTSL 3 BASIC18.17■□□□□ 0.5
CNOT4O95628 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CNOT4O95628 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC18.17■□□□□ 0.5
CNOT4O95628 AC092118.2-201ENST00000613495 667 ntBASIC18.17■□□□□ 0.5
CNOT4O95628 AC133041.1-202ENST00000642053 222 ntBASIC18.17■□□□□ 0.5
CNOT4O95628 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CNOT4O95628 AC007375.3-201ENST00000600936 2314 ntBASIC18.17■□□□□ 0.5
CNOT4O95628 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CNOT4O95628 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
CNOT4O95628 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC18.16■□□□□ 0.5
CNOT4O95628 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CNOT4O95628 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CNOT4O95628 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
CNOT4O95628 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CNOT4O95628 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CNOT4O95628 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC18.16■□□□□ 0.5
CNOT4O95628 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CNOT4O95628 MCRIP2P1-201ENST00000394346 511 ntBASIC18.16■□□□□ 0.5
CNOT4O95628 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
CNOT4O95628 MIPEPP3-201ENST00000412105 444 ntBASIC18.16■□□□□ 0.5
CNOT4O95628 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CNOT4O95628 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
CNOT4O95628 VMO1-204ENST00000441199 741 ntTSL 2 BASIC18.16■□□□□ 0.5
CNOT4O95628 AC093787.1-201ENST00000450396 207 ntBASIC18.16■□□□□ 0.5
CNOT4O95628 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC18.16■□□□□ 0.5
CNOT4O95628 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC18.16■□□□□ 0.5
CNOT4O95628 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC18.16■□□□□ 0.5
CNOT4O95628 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC18.16■□□□□ 0.5
CNOT4O95628 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
CNOT4O95628 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CNOT4O95628 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CNOT4O95628 USP48-205ENST00000421625 2818 ntTSL 2 BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms