Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC19.84■□□□□ 0.77
CLDN9O95484 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CLDN9O95484 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
CLDN9O95484 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
CLDN9O95484 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CLDN9O95484 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
CLDN9O95484 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CLDN9O95484 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.83■□□□□ 0.77
CLDN9O95484 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC19.83■□□□□ 0.77
CLDN9O95484 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CLDN9O95484 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC19.83■□□□□ 0.77
CLDN9O95484 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CLDN9O95484 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CLDN9O95484 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CLDN9O95484 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
CLDN9O95484 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CLDN9O95484 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
CLDN9O95484 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC19.83■□□□□ 0.77
CLDN9O95484 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC19.83■□□□□ 0.77
CLDN9O95484 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CLDN9O95484 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CLDN9O95484 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC19.83■□□□□ 0.77
CLDN9O95484 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.83■□□□□ 0.76
CLDN9O95484 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.83■□□□□ 0.76
CLDN9O95484 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC19.83■□□□□ 0.76
CLDN9O95484 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
CLDN9O95484 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
CLDN9O95484 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC19.83■□□□□ 0.76
CLDN9O95484 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.76
CLDN9O95484 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
CLDN9O95484 SLC25A24-204ENST00000569674 2357 ntBASIC19.83■□□□□ 0.76
CLDN9O95484 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
CLDN9O95484 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC19.83■□□□□ 0.76
CLDN9O95484 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CLDN9O95484 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
CLDN9O95484 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CLDN9O95484 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CLDN9O95484 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC19.82■□□□□ 0.76
CLDN9O95484 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CLDN9O95484 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CLDN9O95484 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CLDN9O95484 AC091799.1-201ENST00000422823 811 ntBASIC19.82■□□□□ 0.76
CLDN9O95484 AC097381.1-201ENST00000429019 1296 ntBASIC19.82■□□□□ 0.76
CLDN9O95484 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC19.82■□□□□ 0.76
CLDN9O95484 AC034268.1-201ENST00000441047 882 ntBASIC19.82■□□□□ 0.76
CLDN9O95484 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC19.82■□□□□ 0.76
CLDN9O95484 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC19.82■□□□□ 0.76
CLDN9O95484 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CLDN9O95484 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CLDN9O95484 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CLDN9O95484 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.82■□□□□ 0.76
CLDN9O95484 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
CLDN9O95484 AL121603.2-201ENST00000557373 2117 ntBASIC19.82■□□□□ 0.76
CLDN9O95484 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CLDN9O95484 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CLDN9O95484 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
CLDN9O95484 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CLDN9O95484 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLDN9O95484 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLDN9O95484 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.81■□□□□ 0.76
CLDN9O95484 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLDN9O95484 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
CLDN9O95484 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
CLDN9O95484 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLDN9O95484 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.81■□□□□ 0.76
CLDN9O95484 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC19.81■□□□□ 0.76
CLDN9O95484 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC19.81■□□□□ 0.76
CLDN9O95484 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
CLDN9O95484 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC19.81■□□□□ 0.76
CLDN9O95484 NTF6G-201ENST00000591094 616 ntBASIC19.81■□□□□ 0.76
CLDN9O95484 UBE2DNL-204ENST00000602536 740 ntBASIC19.81■□□□□ 0.76
CLDN9O95484 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLDN9O95484 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.81■□□□□ 0.76
CLDN9O95484 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLDN9O95484 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLDN9O95484 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLDN9O95484 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC19.8■□□□□ 0.76
CLDN9O95484 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLDN9O95484 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
CLDN9O95484 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLDN9O95484 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLDN9O95484 HACD1-201ENST00000326961 773 ntTSL 2 BASIC19.8■□□□□ 0.76
CLDN9O95484 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLDN9O95484 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC19.8■□□□□ 0.76
CLDN9O95484 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CLDN9O95484 TFG-210ENST00000620299 1289 ntTSL 5 BASIC19.8■□□□□ 0.76
CLDN9O95484 MIR2861-201ENST00000636310 90 ntBASIC19.8■□□□□ 0.76
CLDN9O95484 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
CLDN9O95484 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC19.8■□□□□ 0.76
CLDN9O95484 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLDN9O95484 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.8■□□□□ 0.76
CLDN9O95484 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
CLDN9O95484 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLDN9O95484 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CLDN9O95484 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC19.79■□□□□ 0.76
CLDN9O95484 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC19.79■□□□□ 0.76
CLDN9O95484 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CLDN9O95484 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
CLDN9O95484 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.79■□□□□ 0.76
CLDN9O95484 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms