Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC22.02■■□□□ 1.12
RNF40O75150 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC22.02■■□□□ 1.12
RNF40O75150 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
RNF40O75150 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
RNF40O75150 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC22.02■■□□□ 1.12
RNF40O75150 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
RNF40O75150 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC22.02■■□□□ 1.12
RNF40O75150 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
RNF40O75150 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC22.01■■□□□ 1.11
RNF40O75150 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
RNF40O75150 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
RNF40O75150 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
RNF40O75150 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC22.01■■□□□ 1.11
RNF40O75150 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
RNF40O75150 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC22.01■■□□□ 1.11
RNF40O75150 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC22.01■■□□□ 1.11
RNF40O75150 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC22.01■■□□□ 1.11
RNF40O75150 AL050303.2-201ENST00000619798 666 ntBASIC22.01■■□□□ 1.11
RNF40O75150 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
RNF40O75150 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
RNF40O75150 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
RNF40O75150 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC22.01■■□□□ 1.11
RNF40O75150 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
RNF40O75150 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
RNF40O75150 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC22.01■■□□□ 1.11
RNF40O75150 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC22.01■■□□□ 1.11
RNF40O75150 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC22■■□□□ 1.11
RNF40O75150 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC22■■□□□ 1.11
RNF40O75150 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC22■■□□□ 1.11
RNF40O75150 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
RNF40O75150 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
RNF40O75150 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
RNF40O75150 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC22■■□□□ 1.11
RNF40O75150 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC22■■□□□ 1.11
RNF40O75150 APTR-205ENST00000447009 902 ntTSL 2 BASIC22■■□□□ 1.11
RNF40O75150 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
RNF40O75150 UBE2DNL-204ENST00000602536 740 ntBASIC22■■□□□ 1.11
RNF40O75150 AL121832.2-201ENST00000610979 668 ntBASIC22■■□□□ 1.11
RNF40O75150 GAMT-205ENST00000640762 751 ntTSL 5 BASIC22■■□□□ 1.11
RNF40O75150 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC22■■□□□ 1.11
RNF40O75150 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC22■■□□□ 1.11
RNF40O75150 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
RNF40O75150 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
RNF40O75150 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
RNF40O75150 PXK-203ENST00000383715 1756 ntTSL 5 BASIC21.99■■□□□ 1.11
RNF40O75150 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
RNF40O75150 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
RNF40O75150 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC21.99■■□□□ 1.11
RNF40O75150 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC21.99■■□□□ 1.11
RNF40O75150 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
RNF40O75150 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
RNF40O75150 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC21.99■■□□□ 1.11
RNF40O75150 PARP1-202ENST00000366792 553 ntTSL 3 BASIC21.99■■□□□ 1.11
RNF40O75150 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
RNF40O75150 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC21.99■■□□□ 1.11
RNF40O75150 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC21.99■■□□□ 1.11
RNF40O75150 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC21.99■■□□□ 1.11
RNF40O75150 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
RNF40O75150 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
RNF40O75150 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC21.99■■□□□ 1.11
RNF40O75150 AC231657.2-201ENST00000624556 255 ntBASIC21.99■■□□□ 1.11
RNF40O75150 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
RNF40O75150 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC21.99■■□□□ 1.11
RNF40O75150 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
RNF40O75150 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
RNF40O75150 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
RNF40O75150 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
RNF40O75150 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC21.98■■□□□ 1.11
RNF40O75150 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
RNF40O75150 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC21.98■■□□□ 1.11
RNF40O75150 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC21.98■■□□□ 1.11
RNF40O75150 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
RNF40O75150 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC21.98■■□□□ 1.11
RNF40O75150 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC21.98■■□□□ 1.11
RNF40O75150 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
RNF40O75150 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC21.98■■□□□ 1.11
RNF40O75150 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC21.98■■□□□ 1.11
RNF40O75150 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC21.98■■□□□ 1.11
RNF40O75150 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC21.98■■□□□ 1.11
RNF40O75150 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC21.98■■□□□ 1.11
RNF40O75150 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
RNF40O75150 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
RNF40O75150 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC21.98■■□□□ 1.11
RNF40O75150 PCDHAC2-203ENST00000615316 3011 ntBASIC21.97■■□□□ 1.11
RNF40O75150 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
RNF40O75150 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
RNF40O75150 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
RNF40O75150 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC21.97■■□□□ 1.11
RNF40O75150 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
RNF40O75150 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC21.97■■□□□ 1.11
RNF40O75150 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC21.97■■□□□ 1.11
RNF40O75150 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
RNF40O75150 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC21.97■■□□□ 1.11
RNF40O75150 AC083906.2-201ENST00000511578 360 ntBASIC21.97■■□□□ 1.11
RNF40O75150 CD99P1-205ENST00000527459 561 ntBASIC21.97■■□□□ 1.11
RNF40O75150 DUX4L16-201ENST00000555130 1264 ntBASIC21.97■■□□□ 1.11
RNF40O75150 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC21.97■■□□□ 1.11
RNF40O75150 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
RNF40O75150 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC21.97■■□□□ 1.11
RNF40O75150 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms