Protein–RNA interactions for Protein: O60609

GFRA3, GDNF family receptor alpha-3, humanhuman

Predictions only

Length 400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA3O60609 AP000347.1-202ENST00000435868 847 ntBASIC20.18■□□□□ 0.82
GFRA3O60609 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC20.18■□□□□ 0.82
GFRA3O60609 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
GFRA3O60609 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
GFRA3O60609 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC20.18■□□□□ 0.82
GFRA3O60609 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
GFRA3O60609 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
GFRA3O60609 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
GFRA3O60609 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
GFRA3O60609 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
GFRA3O60609 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
GFRA3O60609 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
GFRA3O60609 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC20.17■□□□□ 0.82
GFRA3O60609 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC20.17■□□□□ 0.82
GFRA3O60609 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
GFRA3O60609 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC20.17■□□□□ 0.82
GFRA3O60609 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC20.17■□□□□ 0.82
GFRA3O60609 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC20.17■□□□□ 0.82
GFRA3O60609 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC20.17■□□□□ 0.82
GFRA3O60609 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
GFRA3O60609 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
GFRA3O60609 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
GFRA3O60609 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
GFRA3O60609 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
GFRA3O60609 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC20.17■□□□□ 0.82
GFRA3O60609 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC20.17■□□□□ 0.82
GFRA3O60609 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC20.17■□□□□ 0.82
GFRA3O60609 AC128688.1-201ENST00000487626 519 ntBASIC20.17■□□□□ 0.82
GFRA3O60609 KRT18P16-201ENST00000510337 1294 ntBASIC20.17■□□□□ 0.82
GFRA3O60609 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
GFRA3O60609 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
GFRA3O60609 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
GFRA3O60609 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
GFRA3O60609 H19-210ENST00000439725 1929 ntTSL 2 BASIC20.17■□□□□ 0.82
GFRA3O60609 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
GFRA3O60609 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC20.17■□□□□ 0.82
GFRA3O60609 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
GFRA3O60609 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
GFRA3O60609 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
GFRA3O60609 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
GFRA3O60609 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
GFRA3O60609 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.16■□□□□ 0.82
GFRA3O60609 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC20.16■□□□□ 0.82
GFRA3O60609 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
GFRA3O60609 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
GFRA3O60609 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.16■□□□□ 0.82
GFRA3O60609 AC246785.2-201ENST00000432512 513 ntBASIC20.16■□□□□ 0.82
GFRA3O60609 PVRIG2P-201ENST00000435460 978 ntBASIC20.16■□□□□ 0.82
GFRA3O60609 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
GFRA3O60609 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.16■□□□□ 0.82
GFRA3O60609 ECEL1P2-202ENST00000465689 757 ntBASIC20.16■□□□□ 0.82
GFRA3O60609 CD320-202ENST00000537716 1119 ntTSL 2 BASIC20.16■□□□□ 0.82
GFRA3O60609 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC20.16■□□□□ 0.82
GFRA3O60609 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
GFRA3O60609 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC20.16■□□□□ 0.82
GFRA3O60609 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC20.16■□□□□ 0.82
GFRA3O60609 IER3-202ENST00000376377 1350 ntBASIC20.16■□□□□ 0.82
GFRA3O60609 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
GFRA3O60609 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
GFRA3O60609 NBPF21P-201ENST00000425093 1451 ntBASIC20.16■□□□□ 0.82
GFRA3O60609 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
GFRA3O60609 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC20.16■□□□□ 0.82
GFRA3O60609 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
GFRA3O60609 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
GFRA3O60609 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
GFRA3O60609 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
GFRA3O60609 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC20.15■□□□□ 0.82
GFRA3O60609 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC20.15■□□□□ 0.82
GFRA3O60609 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC20.15■□□□□ 0.82
GFRA3O60609 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC20.15■□□□□ 0.82
GFRA3O60609 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC20.15■□□□□ 0.82
GFRA3O60609 AC116562.2-201ENST00000507042 360 ntBASIC20.15■□□□□ 0.82
GFRA3O60609 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC20.15■□□□□ 0.82
GFRA3O60609 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC20.15■□□□□ 0.82
GFRA3O60609 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
GFRA3O60609 C2orf69P3-201ENST00000565542 1120 ntBASIC20.15■□□□□ 0.82
GFRA3O60609 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC20.15■□□□□ 0.82
GFRA3O60609 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC20.15■□□□□ 0.82
GFRA3O60609 IRF5-214ENST00000613821 595 ntTSL 5 BASIC20.15■□□□□ 0.82
GFRA3O60609 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
GFRA3O60609 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
GFRA3O60609 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC20.15■□□□□ 0.82
GFRA3O60609 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.15■□□□□ 0.82
GFRA3O60609 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.15■□□□□ 0.82
GFRA3O60609 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
GFRA3O60609 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
GFRA3O60609 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.82
GFRA3O60609 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
GFRA3O60609 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
GFRA3O60609 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
GFRA3O60609 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
GFRA3O60609 AC117947.1-201ENST00000427448 529 ntBASIC20.14■□□□□ 0.81
GFRA3O60609 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC20.14■□□□□ 0.81
GFRA3O60609 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
GFRA3O60609 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC20.14■□□□□ 0.81
GFRA3O60609 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
GFRA3O60609 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
GFRA3O60609 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
GFRA3O60609 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC20.13■□□□□ 0.81
GFRA3O60609 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms