Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC23.12■■□□□ 1.29
MSH4O15457 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC23.12■■□□□ 1.29
MSH4O15457 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
MSH4O15457 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC23.12■■□□□ 1.29
MSH4O15457 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC23.12■■□□□ 1.29
MSH4O15457 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
MSH4O15457 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC23.12■■□□□ 1.29
MSH4O15457 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC23.12■■□□□ 1.29
MSH4O15457 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC23.12■■□□□ 1.29
MSH4O15457 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC23.12■■□□□ 1.29
MSH4O15457 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
MSH4O15457 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC23.11■■□□□ 1.29
MSH4O15457 PALM-208ENST00000592155 2272 ntTSL 4 BASIC23.11■■□□□ 1.29
MSH4O15457 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
MSH4O15457 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
MSH4O15457 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
MSH4O15457 DUSP5P2-201ENST00000426873 1033 ntBASIC23.11■■□□□ 1.29
MSH4O15457 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC23.11■■□□□ 1.29
MSH4O15457 OR2A1-AS1-201ENST00000462305 773 ntBASIC23.11■■□□□ 1.29
MSH4O15457 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC23.11■■□□□ 1.29
MSH4O15457 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
MSH4O15457 MYC-209ENST00000641252 345 ntBASIC23.11■■□□□ 1.29
MSH4O15457 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
MSH4O15457 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
MSH4O15457 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
MSH4O15457 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC23.11■■□□□ 1.29
MSH4O15457 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
MSH4O15457 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC23.1■■□□□ 1.29
MSH4O15457 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC23.1■■□□□ 1.29
MSH4O15457 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC23.1■■□□□ 1.29
MSH4O15457 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
MSH4O15457 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
MSH4O15457 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.29
MSH4O15457 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC23.1■■□□□ 1.29
MSH4O15457 AC091874.3-201ENST00000512672 1195 ntBASIC23.1■■□□□ 1.29
MSH4O15457 RGMA-211ENST00000557420 989 ntTSL 3 BASIC23.1■■□□□ 1.29
MSH4O15457 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
MSH4O15457 AL589743.5-201ENST00000616611 1050 ntBASIC23.1■■□□□ 1.29
MSH4O15457 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC23.1■■□□□ 1.29
MSH4O15457 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
MSH4O15457 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC23.1■■□□□ 1.29
MSH4O15457 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
MSH4O15457 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
MSH4O15457 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC23.1■■□□□ 1.29
MSH4O15457 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC23.1■■□□□ 1.29
MSH4O15457 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
MSH4O15457 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
MSH4O15457 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
MSH4O15457 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC23.09■■□□□ 1.29
MSH4O15457 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
MSH4O15457 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC23.09■■□□□ 1.29
MSH4O15457 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
MSH4O15457 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC23.09■■□□□ 1.29
MSH4O15457 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC23.09■■□□□ 1.29
MSH4O15457 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
MSH4O15457 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC23.09■■□□□ 1.29
MSH4O15457 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC23.09■■□□□ 1.29
MSH4O15457 BET1L-207ENST00000529614 560 ntTSL 5 BASIC23.09■■□□□ 1.29
MSH4O15457 AC105020.6-201ENST00000621523 1217 ntBASIC23.09■■□□□ 1.29
MSH4O15457 MIR2861-201ENST00000636310 90 ntBASIC23.09■■□□□ 1.29
MSH4O15457 AC006128.1-201ENST00000624704 1661 ntBASIC23.09■■□□□ 1.29
MSH4O15457 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC23.09■■□□□ 1.29
MSH4O15457 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.29
MSH4O15457 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC23.08■■□□□ 1.29
MSH4O15457 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC23.08■■□□□ 1.29
MSH4O15457 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
MSH4O15457 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
MSH4O15457 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
MSH4O15457 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC23.08■■□□□ 1.29
MSH4O15457 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC23.08■■□□□ 1.29
MSH4O15457 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC23.08■■□□□ 1.29
MSH4O15457 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
MSH4O15457 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC23.07■■□□□ 1.28
MSH4O15457 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC23.07■■□□□ 1.28
MSH4O15457 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
MSH4O15457 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC23.07■■□□□ 1.28
MSH4O15457 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC23.07■■□□□ 1.28
MSH4O15457 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC23.07■■□□□ 1.28
MSH4O15457 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
MSH4O15457 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC23.07■■□□□ 1.28
MSH4O15457 RHEB-204ENST00000472642 900 ntTSL 3 BASIC23.07■■□□□ 1.28
MSH4O15457 AC083880.1-201ENST00000608266 535 ntBASIC23.07■■□□□ 1.28
MSH4O15457 AL356652.1-201ENST00000615962 565 ntBASIC23.07■■□□□ 1.28
MSH4O15457 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC23.07■■□□□ 1.28
MSH4O15457 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC23.07■■□□□ 1.28
MSH4O15457 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC23.07■■□□□ 1.28
MSH4O15457 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
MSH4O15457 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC23.07■■□□□ 1.28
MSH4O15457 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC23.07■■□□□ 1.28
MSH4O15457 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC23.07■■□□□ 1.28
MSH4O15457 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
MSH4O15457 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC23.06■■□□□ 1.28
MSH4O15457 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC23.06■■□□□ 1.28
MSH4O15457 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
MSH4O15457 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC23.06■■□□□ 1.28
MSH4O15457 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC23.06■■□□□ 1.28
MSH4O15457 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
MSH4O15457 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
MSH4O15457 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
MSH4O15457 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC23.06■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms