Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC20.98■□□□□ 0.95
CBX4O00257 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC20.98■□□□□ 0.95
CBX4O00257 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC20.98■□□□□ 0.95
CBX4O00257 AC098934.4-201ENST00000564127 592 ntBASIC20.98■□□□□ 0.95
CBX4O00257 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC20.98■□□□□ 0.95
CBX4O00257 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC20.98■□□□□ 0.95
CBX4O00257 AC100791.3-201ENST00000617619 330 ntBASIC20.98■□□□□ 0.95
CBX4O00257 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
CBX4O00257 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
CBX4O00257 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CBX4O00257 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
CBX4O00257 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CBX4O00257 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CBX4O00257 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
CBX4O00257 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CBX4O00257 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CBX4O00257 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
CBX4O00257 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
CBX4O00257 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CBX4O00257 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CBX4O00257 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CBX4O00257 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CBX4O00257 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
CBX4O00257 MCRIP2P1-201ENST00000394346 511 ntBASIC20.97■□□□□ 0.95
CBX4O00257 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC20.97■□□□□ 0.95
CBX4O00257 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC20.97■□□□□ 0.95
CBX4O00257 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
CBX4O00257 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
CBX4O00257 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC20.97■□□□□ 0.95
CBX4O00257 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CBX4O00257 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
CBX4O00257 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC20.96■□□□□ 0.95
CBX4O00257 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
CBX4O00257 CYP21A1P-202ENST00000354927 1481 ntBASIC20.96■□□□□ 0.95
CBX4O00257 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.96■□□□□ 0.95
CBX4O00257 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
CBX4O00257 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CBX4O00257 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
CBX4O00257 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC20.96■□□□□ 0.95
CBX4O00257 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC20.96■□□□□ 0.95
CBX4O00257 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC20.96■□□□□ 0.95
CBX4O00257 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC20.96■□□□□ 0.95
CBX4O00257 MIR4758-201ENST00000577688 71 ntBASIC20.96■□□□□ 0.95
CBX4O00257 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC20.96■□□□□ 0.95
CBX4O00257 CYP2T3P-201ENST00000601990 817 ntBASIC20.96■□□□□ 0.95
CBX4O00257 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
CBX4O00257 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CBX4O00257 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CBX4O00257 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
CBX4O00257 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC20.95■□□□□ 0.95
CBX4O00257 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC20.95■□□□□ 0.95
CBX4O00257 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC20.95■□□□□ 0.94
CBX4O00257 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CBX4O00257 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CBX4O00257 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CBX4O00257 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CBX4O00257 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.95■□□□□ 0.94
CBX4O00257 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CBX4O00257 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
CBX4O00257 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CBX4O00257 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC20.95■□□□□ 0.94
CBX4O00257 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CBX4O00257 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CBX4O00257 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CBX4O00257 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC20.95■□□□□ 0.94
CBX4O00257 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CBX4O00257 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CBX4O00257 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC20.94■□□□□ 0.94
CBX4O00257 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CBX4O00257 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CBX4O00257 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
CBX4O00257 LSM12P1-201ENST00000411836 588 ntBASIC20.94■□□□□ 0.94
CBX4O00257 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CBX4O00257 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC20.94■□□□□ 0.94
CBX4O00257 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC20.94■□□□□ 0.94
CBX4O00257 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC20.94■□□□□ 0.94
CBX4O00257 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CBX4O00257 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
CBX4O00257 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20.94■□□□□ 0.94
CBX4O00257 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CBX4O00257 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CBX4O00257 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC20.94■□□□□ 0.94
CBX4O00257 KRT17P1-201ENST00000399211 1546 ntBASIC20.94■□□□□ 0.94
CBX4O00257 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CBX4O00257 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CBX4O00257 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC20.93■□□□□ 0.94
CBX4O00257 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.93■□□□□ 0.94
CBX4O00257 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CBX4O00257 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.93■□□□□ 0.94
CBX4O00257 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CBX4O00257 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CBX4O00257 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
CBX4O00257 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CBX4O00257 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CBX4O00257 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CBX4O00257 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC20.93■□□□□ 0.94
CBX4O00257 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CBX4O00257 AC069152.1-201ENST00000438030 544 ntBASIC20.93■□□□□ 0.94
CBX4O00257 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC20.93■□□□□ 0.94
CBX4O00257 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms