Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PCDHA3Q9Y5H8 ME2-218ENST00000640965 2476 ntTSL 5 BASIC21.5■■□□□ 1.03
PCDHA3Q9Y5H8 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PCDHA3Q9Y5H8 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PCDHA3Q9Y5H8 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
PCDHA3Q9Y5H8 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC21.5■■□□□ 1.03
PCDHA3Q9Y5H8 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
PCDHA3Q9Y5H8 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
PCDHA3Q9Y5H8 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PCDHA3Q9Y5H8 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
PCDHA3Q9Y5H8 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PCDHA3Q9Y5H8 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
PCDHA3Q9Y5H8 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC21.49■■□□□ 1.03
PCDHA3Q9Y5H8 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC21.49■■□□□ 1.03
PCDHA3Q9Y5H8 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PCDHA3Q9Y5H8 AC120498.10-201ENST00000621827 505 ntBASIC21.49■■□□□ 1.03
PCDHA3Q9Y5H8 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PCDHA3Q9Y5H8 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
PCDHA3Q9Y5H8 LINC02228-203ENST00000641970 1355 ntBASIC21.48■■□□□ 1.03
PCDHA3Q9Y5H8 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC21.48■■□□□ 1.03
PCDHA3Q9Y5H8 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PCDHA3Q9Y5H8 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PCDHA3Q9Y5H8 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC21.48■■□□□ 1.03
PCDHA3Q9Y5H8 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PCDHA3Q9Y5H8 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
PCDHA3Q9Y5H8 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PCDHA3Q9Y5H8 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PCDHA3Q9Y5H8 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
PCDHA3Q9Y5H8 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC21.48■■□□□ 1.03
PCDHA3Q9Y5H8 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC21.48■■□□□ 1.03
PCDHA3Q9Y5H8 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PCDHA3Q9Y5H8 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC21.48■■□□□ 1.03
PCDHA3Q9Y5H8 AC099778.1-201ENST00000568593 1911 ntBASIC21.48■■□□□ 1.03
PCDHA3Q9Y5H8 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PCDHA3Q9Y5H8 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PCDHA3Q9Y5H8 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
PCDHA3Q9Y5H8 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC21.48■■□□□ 1.03
PCDHA3Q9Y5H8 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC21.48■■□□□ 1.03
PCDHA3Q9Y5H8 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC21.48■■□□□ 1.03
PCDHA3Q9Y5H8 AC092720.2-201ENST00000602388 1665 ntBASIC21.47■■□□□ 1.03
PCDHA3Q9Y5H8 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
PCDHA3Q9Y5H8 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PCDHA3Q9Y5H8 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PCDHA3Q9Y5H8 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PCDHA3Q9Y5H8 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PCDHA3Q9Y5H8 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PCDHA3Q9Y5H8 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PCDHA3Q9Y5H8 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PCDHA3Q9Y5H8 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC21.47■■□□□ 1.03
PCDHA3Q9Y5H8 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC21.47■■□□□ 1.03
PCDHA3Q9Y5H8 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
PCDHA3Q9Y5H8 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PCDHA3Q9Y5H8 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
PCDHA3Q9Y5H8 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC21.46■■□□□ 1.03
PCDHA3Q9Y5H8 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
PCDHA3Q9Y5H8 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCDHA3Q9Y5H8 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCDHA3Q9Y5H8 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCDHA3Q9Y5H8 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC21.46■■□□□ 1.03
PCDHA3Q9Y5H8 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCDHA3Q9Y5H8 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCDHA3Q9Y5H8 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC21.46■■□□□ 1.03
PCDHA3Q9Y5H8 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC21.46■■□□□ 1.03
PCDHA3Q9Y5H8 SLC7A5P2-201ENST00000553010 536 ntBASIC21.46■■□□□ 1.03
PCDHA3Q9Y5H8 DUX4L2-201ENST00000561772 1275 ntBASIC21.46■■□□□ 1.03
PCDHA3Q9Y5H8 AC104187.1-201ENST00000607510 612 ntBASIC21.46■■□□□ 1.03
PCDHA3Q9Y5H8 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC21.46■■□□□ 1.03
PCDHA3Q9Y5H8 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC21.46■■□□□ 1.03
PCDHA3Q9Y5H8 DUX4L6-201ENST00000626483 1275 ntBASIC21.46■■□□□ 1.03
PCDHA3Q9Y5H8 DUX4L1-201ENST00000627662 1275 ntBASIC21.46■■□□□ 1.03
PCDHA3Q9Y5H8 DUX4L8-201ENST00000629013 1275 ntBASIC21.46■■□□□ 1.03
PCDHA3Q9Y5H8 DUX4L3-201ENST00000630187 1275 ntBASIC21.46■■□□□ 1.03
PCDHA3Q9Y5H8 DUX4L7-201ENST00000630678 1275 ntBASIC21.46■■□□□ 1.03
PCDHA3Q9Y5H8 DUX4L5-201ENST00000630834 1275 ntBASIC21.46■■□□□ 1.03
PCDHA3Q9Y5H8 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PCDHA3Q9Y5H8 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC21.46■■□□□ 1.03
PCDHA3Q9Y5H8 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC21.46■■□□□ 1.03
PCDHA3Q9Y5H8 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCDHA3Q9Y5H8 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC21.46■■□□□ 1.03
PCDHA3Q9Y5H8 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC21.45■■□□□ 1.02
PCDHA3Q9Y5H8 PCDHAC2-203ENST00000615316 3011 ntBASIC21.45■■□□□ 1.02
PCDHA3Q9Y5H8 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
PCDHA3Q9Y5H8 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
PCDHA3Q9Y5H8 AFG3L1P-217ENST00000557444 2447 ntBASIC21.45■■□□□ 1.02
PCDHA3Q9Y5H8 AC112907.3-201ENST00000577781 2400 ntBASIC21.45■■□□□ 1.02
PCDHA3Q9Y5H8 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PCDHA3Q9Y5H8 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC21.45■■□□□ 1.02
PCDHA3Q9Y5H8 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
PCDHA3Q9Y5H8 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PCDHA3Q9Y5H8 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PCDHA3Q9Y5H8 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC21.45■■□□□ 1.02
PCDHA3Q9Y5H8 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
PCDHA3Q9Y5H8 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC21.45■■□□□ 1.02
PCDHA3Q9Y5H8 AC116050.2-201ENST00000612102 1779 ntBASIC21.45■■□□□ 1.02
PCDHA3Q9Y5H8 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PCDHA3Q9Y5H8 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
PCDHA3Q9Y5H8 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC21.45■■□□□ 1.02
PCDHA3Q9Y5H8 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
PCDHA3Q9Y5H8 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PCDHA3Q9Y5H8 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC21.45■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms