Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.58■□□□□ 0.88
TM9SF3Q9HD45 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
TM9SF3Q9HD45 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC20.58■□□□□ 0.88
TM9SF3Q9HD45 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
TM9SF3Q9HD45 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC20.58■□□□□ 0.88
TM9SF3Q9HD45 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
TM9SF3Q9HD45 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.57■□□□□ 0.88
TM9SF3Q9HD45 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TM9SF3Q9HD45 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TM9SF3Q9HD45 VMO1-204ENST00000441199 741 ntTSL 2 BASIC20.57■□□□□ 0.88
TM9SF3Q9HD45 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC20.57■□□□□ 0.88
TM9SF3Q9HD45 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC20.57■□□□□ 0.88
TM9SF3Q9HD45 HLA-B-256ENST00000639848 1089 ntBASIC20.57■□□□□ 0.88
TM9SF3Q9HD45 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TM9SF3Q9HD45 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TM9SF3Q9HD45 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TM9SF3Q9HD45 FBXW4P1-201ENST00000426721 2239 ntBASIC20.57■□□□□ 0.88
TM9SF3Q9HD45 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
TM9SF3Q9HD45 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
TM9SF3Q9HD45 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
TM9SF3Q9HD45 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.56■□□□□ 0.88
TM9SF3Q9HD45 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TM9SF3Q9HD45 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TM9SF3Q9HD45 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TM9SF3Q9HD45 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TM9SF3Q9HD45 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TM9SF3Q9HD45 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TM9SF3Q9HD45 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TM9SF3Q9HD45 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TM9SF3Q9HD45 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC20.56■□□□□ 0.88
TM9SF3Q9HD45 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.56■□□□□ 0.88
TM9SF3Q9HD45 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TM9SF3Q9HD45 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TM9SF3Q9HD45 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TM9SF3Q9HD45 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TM9SF3Q9HD45 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
TM9SF3Q9HD45 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
TM9SF3Q9HD45 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC20.56■□□□□ 0.88
TM9SF3Q9HD45 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC20.56■□□□□ 0.88
TM9SF3Q9HD45 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.56■□□□□ 0.88
TM9SF3Q9HD45 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TM9SF3Q9HD45 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
TM9SF3Q9HD45 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
TM9SF3Q9HD45 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.55■□□□□ 0.88
TM9SF3Q9HD45 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.55■□□□□ 0.88
TM9SF3Q9HD45 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TM9SF3Q9HD45 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TM9SF3Q9HD45 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TM9SF3Q9HD45 UNC93B4-201ENST00000505679 747 ntBASIC20.55■□□□□ 0.88
TM9SF3Q9HD45 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC20.55■□□□□ 0.88
TM9SF3Q9HD45 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC20.55■□□□□ 0.88
TM9SF3Q9HD45 AC008403.3-201ENST00000598924 454 ntBASIC20.55■□□□□ 0.88
TM9SF3Q9HD45 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TM9SF3Q9HD45 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
TM9SF3Q9HD45 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TM9SF3Q9HD45 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TM9SF3Q9HD45 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.55■□□□□ 0.88
TM9SF3Q9HD45 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC20.55■□□□□ 0.88
TM9SF3Q9HD45 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
TM9SF3Q9HD45 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC20.55■□□□□ 0.88
TM9SF3Q9HD45 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TM9SF3Q9HD45 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TM9SF3Q9HD45 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TM9SF3Q9HD45 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.54■□□□□ 0.88
TM9SF3Q9HD45 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TM9SF3Q9HD45 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TM9SF3Q9HD45 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TM9SF3Q9HD45 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TM9SF3Q9HD45 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
TM9SF3Q9HD45 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TM9SF3Q9HD45 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC20.54■□□□□ 0.88
TM9SF3Q9HD45 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC20.54■□□□□ 0.88
TM9SF3Q9HD45 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC20.54■□□□□ 0.88
TM9SF3Q9HD45 RPS2P4-201ENST00000476944 856 ntBASIC20.54■□□□□ 0.88
TM9SF3Q9HD45 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC20.54■□□□□ 0.88
TM9SF3Q9HD45 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC20.54■□□□□ 0.88
TM9SF3Q9HD45 ARL16-209ENST00000573715 763 ntTSL 3 BASIC20.54■□□□□ 0.88
TM9SF3Q9HD45 ARL16-211ENST00000576135 694 ntTSL 3 BASIC20.54■□□□□ 0.88
TM9SF3Q9HD45 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
TM9SF3Q9HD45 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TM9SF3Q9HD45 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
TM9SF3Q9HD45 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
TM9SF3Q9HD45 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.54■□□□□ 0.88
TM9SF3Q9HD45 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TM9SF3Q9HD45 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TM9SF3Q9HD45 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TM9SF3Q9HD45 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TM9SF3Q9HD45 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TM9SF3Q9HD45 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
TM9SF3Q9HD45 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TM9SF3Q9HD45 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TM9SF3Q9HD45 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TM9SF3Q9HD45 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
TM9SF3Q9HD45 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TM9SF3Q9HD45 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TM9SF3Q9HD45 KRT18P68-201ENST00000392293 1000 ntBASIC20.53■□□□□ 0.88
TM9SF3Q9HD45 SAPCD2P1-201ENST00000395413 1184 ntBASIC20.53■□□□□ 0.88
TM9SF3Q9HD45 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
TM9SF3Q9HD45 AL596275.1-201ENST00000423464 877 ntBASIC20.53■□□□□ 0.88
TM9SF3Q9HD45 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms