Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.39■□□□□ 0.85
TRIM39Q9HCM9 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
TRIM39Q9HCM9 AL137060.1-201ENST00000618151 2648 ntBASIC20.39■□□□□ 0.85
TRIM39Q9HCM9 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
TRIM39Q9HCM9 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
TRIM39Q9HCM9 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRIM39Q9HCM9 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
TRIM39Q9HCM9 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
TRIM39Q9HCM9 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
TRIM39Q9HCM9 SLC29A4P1-201ENST00000398760 971 ntBASIC20.38■□□□□ 0.85
TRIM39Q9HCM9 GUSBP6-202ENST00000438529 1198 ntBASIC20.38■□□□□ 0.85
TRIM39Q9HCM9 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC20.38■□□□□ 0.85
TRIM39Q9HCM9 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC20.38■□□□□ 0.85
TRIM39Q9HCM9 AC100791.3-201ENST00000617619 330 ntBASIC20.38■□□□□ 0.85
TRIM39Q9HCM9 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
TRIM39Q9HCM9 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRIM39Q9HCM9 MKRN4P-201ENST00000444706 1521 ntBASIC20.37■□□□□ 0.85
TRIM39Q9HCM9 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
TRIM39Q9HCM9 AC010980.2-201ENST00000587099 1412 ntBASIC20.37■□□□□ 0.85
TRIM39Q9HCM9 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRIM39Q9HCM9 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
TRIM39Q9HCM9 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRIM39Q9HCM9 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.37■□□□□ 0.85
TRIM39Q9HCM9 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRIM39Q9HCM9 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC20.37■□□□□ 0.85
TRIM39Q9HCM9 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC20.37■□□□□ 0.85
TRIM39Q9HCM9 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC20.37■□□□□ 0.85
TRIM39Q9HCM9 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRIM39Q9HCM9 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRIM39Q9HCM9 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRIM39Q9HCM9 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRIM39Q9HCM9 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
TRIM39Q9HCM9 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRIM39Q9HCM9 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TRIM39Q9HCM9 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.36■□□□□ 0.85
TRIM39Q9HCM9 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TRIM39Q9HCM9 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC20.36■□□□□ 0.85
TRIM39Q9HCM9 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRIM39Q9HCM9 AC011484.1-201ENST00000377652 1995 ntBASIC20.36■□□□□ 0.85
TRIM39Q9HCM9 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRIM39Q9HCM9 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRIM39Q9HCM9 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
TRIM39Q9HCM9 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC20.36■□□□□ 0.85
TRIM39Q9HCM9 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TRIM39Q9HCM9 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC20.36■□□□□ 0.85
TRIM39Q9HCM9 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
TRIM39Q9HCM9 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC20.36■□□□□ 0.85
TRIM39Q9HCM9 MARS-234ENST00000630571 216 ntTSL 5 BASIC20.36■□□□□ 0.85
TRIM39Q9HCM9 MARS-235ENST00000630803 183 ntTSL 3 BASIC20.36■□□□□ 0.85
TRIM39Q9HCM9 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
TRIM39Q9HCM9 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRIM39Q9HCM9 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TRIM39Q9HCM9 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.35■□□□□ 0.85
TRIM39Q9HCM9 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC20.35■□□□□ 0.85
TRIM39Q9HCM9 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TRIM39Q9HCM9 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TRIM39Q9HCM9 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRIM39Q9HCM9 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC20.35■□□□□ 0.85
TRIM39Q9HCM9 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TRIM39Q9HCM9 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRIM39Q9HCM9 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRIM39Q9HCM9 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC20.35■□□□□ 0.85
TRIM39Q9HCM9 GAMT-205ENST00000640762 751 ntTSL 5 BASIC20.35■□□□□ 0.85
TRIM39Q9HCM9 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRIM39Q9HCM9 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.35■□□□□ 0.85
TRIM39Q9HCM9 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.35■□□□□ 0.85
TRIM39Q9HCM9 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
TRIM39Q9HCM9 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRIM39Q9HCM9 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRIM39Q9HCM9 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC20.35■□□□□ 0.85
TRIM39Q9HCM9 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRIM39Q9HCM9 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRIM39Q9HCM9 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
TRIM39Q9HCM9 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
TRIM39Q9HCM9 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRIM39Q9HCM9 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRIM39Q9HCM9 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRIM39Q9HCM9 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC20.34■□□□□ 0.85
TRIM39Q9HCM9 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC20.34■□□□□ 0.85
TRIM39Q9HCM9 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC20.34■□□□□ 0.85
TRIM39Q9HCM9 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.34■□□□□ 0.85
TRIM39Q9HCM9 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC20.34■□□□□ 0.85
TRIM39Q9HCM9 PFKL-212ENST00000628044 129 ntTSL 3 BASIC20.34■□□□□ 0.85
TRIM39Q9HCM9 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRIM39Q9HCM9 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC20.34■□□□□ 0.85
TRIM39Q9HCM9 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRIM39Q9HCM9 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.34■□□□□ 0.85
TRIM39Q9HCM9 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
TRIM39Q9HCM9 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.33■□□□□ 0.85
TRIM39Q9HCM9 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
TRIM39Q9HCM9 AF106564.1-201ENST00000607058 2553 ntBASIC20.33■□□□□ 0.85
TRIM39Q9HCM9 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
TRIM39Q9HCM9 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
TRIM39Q9HCM9 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
TRIM39Q9HCM9 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC20.33■□□□□ 0.85
TRIM39Q9HCM9 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC20.33■□□□□ 0.85
TRIM39Q9HCM9 PHB2-213ENST00000546111 858 ntTSL 2 BASIC20.33■□□□□ 0.85
TRIM39Q9HCM9 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
TRIM39Q9HCM9 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC20.33■□□□□ 0.85
TRIM39Q9HCM9 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms