Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC21.43■■□□□ 1.02
EBF3Q9H4W6 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC21.43■■□□□ 1.02
EBF3Q9H4W6 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
EBF3Q9H4W6 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
EBF3Q9H4W6 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC21.43■■□□□ 1.02
EBF3Q9H4W6 AC242852.2-201ENST00000615738 1807 ntBASIC21.43■■□□□ 1.02
EBF3Q9H4W6 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
EBF3Q9H4W6 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC21.43■■□□□ 1.02
EBF3Q9H4W6 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC21.43■■□□□ 1.02
EBF3Q9H4W6 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC21.43■■□□□ 1.02
EBF3Q9H4W6 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
EBF3Q9H4W6 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
EBF3Q9H4W6 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
EBF3Q9H4W6 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC21.42■■□□□ 1.02
EBF3Q9H4W6 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
EBF3Q9H4W6 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.02
EBF3Q9H4W6 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
EBF3Q9H4W6 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC21.42■■□□□ 1.02
EBF3Q9H4W6 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
EBF3Q9H4W6 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
EBF3Q9H4W6 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC21.42■■□□□ 1.02
EBF3Q9H4W6 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
EBF3Q9H4W6 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
EBF3Q9H4W6 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC21.42■■□□□ 1.02
EBF3Q9H4W6 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC21.42■■□□□ 1.02
EBF3Q9H4W6 UNC93B5-201ENST00000530315 699 ntBASIC21.42■■□□□ 1.02
EBF3Q9H4W6 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC21.42■■□□□ 1.02
EBF3Q9H4W6 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
EBF3Q9H4W6 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21.42■■□□□ 1.02
EBF3Q9H4W6 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
EBF3Q9H4W6 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
EBF3Q9H4W6 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
EBF3Q9H4W6 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
EBF3Q9H4W6 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
EBF3Q9H4W6 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
EBF3Q9H4W6 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
EBF3Q9H4W6 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
EBF3Q9H4W6 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
EBF3Q9H4W6 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC21.41■■□□□ 1.02
EBF3Q9H4W6 AC128676.1-201ENST00000454392 318 ntBASIC21.41■■□□□ 1.02
EBF3Q9H4W6 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
EBF3Q9H4W6 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC21.41■■□□□ 1.02
EBF3Q9H4W6 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC21.41■■□□□ 1.02
EBF3Q9H4W6 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
EBF3Q9H4W6 AC100791.3-201ENST00000617619 330 ntBASIC21.41■■□□□ 1.02
EBF3Q9H4W6 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
EBF3Q9H4W6 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC21.41■■□□□ 1.02
EBF3Q9H4W6 AC073130.3-201ENST00000624389 2278 ntBASIC21.41■■□□□ 1.02
EBF3Q9H4W6 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
EBF3Q9H4W6 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
EBF3Q9H4W6 STX5-203ENST00000394690 1568 ntTSL 5 BASIC21.4■■□□□ 1.02
EBF3Q9H4W6 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC21.4■■□□□ 1.02
EBF3Q9H4W6 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC21.4■■□□□ 1.02
EBF3Q9H4W6 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
EBF3Q9H4W6 GCSHP5-201ENST00000443090 522 ntBASIC21.4■■□□□ 1.02
EBF3Q9H4W6 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
EBF3Q9H4W6 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
EBF3Q9H4W6 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
EBF3Q9H4W6 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
EBF3Q9H4W6 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC21.39■■□□□ 1.02
EBF3Q9H4W6 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.02
EBF3Q9H4W6 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
EBF3Q9H4W6 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC21.39■■□□□ 1.01
EBF3Q9H4W6 VMO1-204ENST00000441199 741 ntTSL 2 BASIC21.39■■□□□ 1.01
EBF3Q9H4W6 AL158047.1-201ENST00000445918 881 ntBASIC21.39■■□□□ 1.01
EBF3Q9H4W6 NME6-213ENST00000451657 871 ntTSL 2 BASIC21.39■■□□□ 1.01
EBF3Q9H4W6 AC026366.1-201ENST00000488803 879 ntBASIC21.39■■□□□ 1.01
EBF3Q9H4W6 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC21.39■■□□□ 1.01
EBF3Q9H4W6 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
EBF3Q9H4W6 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
EBF3Q9H4W6 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
EBF3Q9H4W6 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC21.39■■□□□ 1.01
EBF3Q9H4W6 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
EBF3Q9H4W6 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
EBF3Q9H4W6 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
EBF3Q9H4W6 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
EBF3Q9H4W6 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
EBF3Q9H4W6 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
EBF3Q9H4W6 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
EBF3Q9H4W6 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
EBF3Q9H4W6 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC21.38■■□□□ 1.01
EBF3Q9H4W6 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
EBF3Q9H4W6 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
EBF3Q9H4W6 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
EBF3Q9H4W6 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC21.38■■□□□ 1.01
EBF3Q9H4W6 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC21.38■■□□□ 1.01
EBF3Q9H4W6 AP003097.1-201ENST00000530657 1135 ntBASIC21.38■■□□□ 1.01
EBF3Q9H4W6 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
EBF3Q9H4W6 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
EBF3Q9H4W6 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
EBF3Q9H4W6 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
EBF3Q9H4W6 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
EBF3Q9H4W6 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
EBF3Q9H4W6 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
EBF3Q9H4W6 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC21.38■■□□□ 1.01
EBF3Q9H4W6 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC21.37■■□□□ 1.01
EBF3Q9H4W6 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.37■■□□□ 1.01
EBF3Q9H4W6 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
EBF3Q9H4W6 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC21.37■■□□□ 1.01
EBF3Q9H4W6 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms