Protein–RNA interactions for Protein: Q9H3Q1

CDC42EP4, Cdc42 effector protein 4, humanhuman

Known RBP Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42EP4Q9H3Q1 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC20.93■□□□□ 0.94
CDC42EP4Q9H3Q1 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CDC42EP4Q9H3Q1 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
CDC42EP4Q9H3Q1 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC20.92■□□□□ 0.94
CDC42EP4Q9H3Q1 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC20.92■□□□□ 0.94
CDC42EP4Q9H3Q1 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CDC42EP4Q9H3Q1 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
CDC42EP4Q9H3Q1 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CDC42EP4Q9H3Q1 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CDC42EP4Q9H3Q1 EEF1DP3-203ENST00000566025 782 ntBASIC20.92■□□□□ 0.94
CDC42EP4Q9H3Q1 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC20.92■□□□□ 0.94
CDC42EP4Q9H3Q1 AC105233.4-201ENST00000642045 216 ntBASIC20.92■□□□□ 0.94
CDC42EP4Q9H3Q1 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.92■□□□□ 0.94
CDC42EP4Q9H3Q1 AP004607.4-201ENST00000530158 1459 ntBASIC20.92■□□□□ 0.94
CDC42EP4Q9H3Q1 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CDC42EP4Q9H3Q1 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
CDC42EP4Q9H3Q1 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CDC42EP4Q9H3Q1 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC20.92■□□□□ 0.94
CDC42EP4Q9H3Q1 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CDC42EP4Q9H3Q1 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
CDC42EP4Q9H3Q1 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CDC42EP4Q9H3Q1 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CDC42EP4Q9H3Q1 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CDC42EP4Q9H3Q1 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CDC42EP4Q9H3Q1 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CDC42EP4Q9H3Q1 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CDC42EP4Q9H3Q1 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC20.91■□□□□ 0.94
CDC42EP4Q9H3Q1 LHPP-203ENST00000392757 840 ntTSL 3 BASIC20.91■□□□□ 0.94
CDC42EP4Q9H3Q1 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CDC42EP4Q9H3Q1 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC20.91■□□□□ 0.94
CDC42EP4Q9H3Q1 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
CDC42EP4Q9H3Q1 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC20.91■□□□□ 0.94
CDC42EP4Q9H3Q1 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.91■□□□□ 0.94
CDC42EP4Q9H3Q1 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CDC42EP4Q9H3Q1 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC20.91■□□□□ 0.94
CDC42EP4Q9H3Q1 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CDC42EP4Q9H3Q1 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CDC42EP4Q9H3Q1 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CDC42EP4Q9H3Q1 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC20.9■□□□□ 0.94
CDC42EP4Q9H3Q1 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CDC42EP4Q9H3Q1 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC20.9■□□□□ 0.94
CDC42EP4Q9H3Q1 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC20.9■□□□□ 0.94
CDC42EP4Q9H3Q1 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CDC42EP4Q9H3Q1 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
CDC42EP4Q9H3Q1 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC20.9■□□□□ 0.94
CDC42EP4Q9H3Q1 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
CDC42EP4Q9H3Q1 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC20.9■□□□□ 0.94
CDC42EP4Q9H3Q1 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC20.9■□□□□ 0.94
CDC42EP4Q9H3Q1 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CDC42EP4Q9H3Q1 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
CDC42EP4Q9H3Q1 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CDC42EP4Q9H3Q1 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
CDC42EP4Q9H3Q1 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CDC42EP4Q9H3Q1 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CDC42EP4Q9H3Q1 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CDC42EP4Q9H3Q1 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
CDC42EP4Q9H3Q1 SMG8-203ENST00000578922 2178 ntBASIC20.89■□□□□ 0.94
CDC42EP4Q9H3Q1 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC20.89■□□□□ 0.93
CDC42EP4Q9H3Q1 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CDC42EP4Q9H3Q1 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CDC42EP4Q9H3Q1 UNC93B3-201ENST00000308076 687 ntBASIC20.89■□□□□ 0.93
CDC42EP4Q9H3Q1 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CDC42EP4Q9H3Q1 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CDC42EP4Q9H3Q1 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CDC42EP4Q9H3Q1 AICDA-202ENST00000537228 667 ntTSL 5 BASIC20.89■□□□□ 0.93
CDC42EP4Q9H3Q1 AC053503.5-201ENST00000601508 636 ntBASIC20.89■□□□□ 0.93
CDC42EP4Q9H3Q1 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CDC42EP4Q9H3Q1 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CDC42EP4Q9H3Q1 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CDC42EP4Q9H3Q1 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CDC42EP4Q9H3Q1 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
CDC42EP4Q9H3Q1 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC20.89■□□□□ 0.93
CDC42EP4Q9H3Q1 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
CDC42EP4Q9H3Q1 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
CDC42EP4Q9H3Q1 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDC42EP4Q9H3Q1 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CDC42EP4Q9H3Q1 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CDC42EP4Q9H3Q1 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
CDC42EP4Q9H3Q1 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CDC42EP4Q9H3Q1 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CDC42EP4Q9H3Q1 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.88■□□□□ 0.93
CDC42EP4Q9H3Q1 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDC42EP4Q9H3Q1 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDC42EP4Q9H3Q1 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CDC42EP4Q9H3Q1 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC20.88■□□□□ 0.93
CDC42EP4Q9H3Q1 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC20.88■□□□□ 0.93
CDC42EP4Q9H3Q1 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CDC42EP4Q9H3Q1 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC20.88■□□□□ 0.93
CDC42EP4Q9H3Q1 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CDC42EP4Q9H3Q1 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
CDC42EP4Q9H3Q1 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDC42EP4Q9H3Q1 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.88■□□□□ 0.93
CDC42EP4Q9H3Q1 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDC42EP4Q9H3Q1 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CDC42EP4Q9H3Q1 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CDC42EP4Q9H3Q1 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CDC42EP4Q9H3Q1 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
CDC42EP4Q9H3Q1 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CDC42EP4Q9H3Q1 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CDC42EP4Q9H3Q1 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC20.87■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms