Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC079598.2-202ENST00000546624 1451 ntBASIC20.55■□□□□ 0.88
VPS13AQ96RL7 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
VPS13AQ96RL7 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS13AQ96RL7 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS13AQ96RL7 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS13AQ96RL7 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
VPS13AQ96RL7 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS13AQ96RL7 ISCU-203ENST00000431221 799 ntTSL 2 BASIC20.54■□□□□ 0.88
VPS13AQ96RL7 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC20.54■□□□□ 0.88
VPS13AQ96RL7 WWOX-216ENST00000569818 525 ntBASIC20.54■□□□□ 0.88
VPS13AQ96RL7 AC087388.1-201ENST00000571370 1112 ntBASIC20.54■□□□□ 0.88
VPS13AQ96RL7 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
VPS13AQ96RL7 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS13AQ96RL7 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS13AQ96RL7 AC005829.2-201ENST00000571422 1056 ntBASIC20.54■□□□□ 0.88
VPS13AQ96RL7 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC20.54■□□□□ 0.88
VPS13AQ96RL7 FAM21FP-204ENST00000608637 956 ntBASIC20.54■□□□□ 0.88
VPS13AQ96RL7 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC20.54■□□□□ 0.88
VPS13AQ96RL7 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
VPS13AQ96RL7 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC20.54■□□□□ 0.88
VPS13AQ96RL7 RBM17P1-201ENST00000453646 1190 ntBASIC20.54■□□□□ 0.88
VPS13AQ96RL7 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC20.54■□□□□ 0.88
VPS13AQ96RL7 AC005363.2-201ENST00000618631 242 ntBASIC20.54■□□□□ 0.88
VPS13AQ96RL7 AC010947.1-201ENST00000623454 693 ntBASIC20.54■□□□□ 0.88
VPS13AQ96RL7 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS13AQ96RL7 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS13AQ96RL7 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS13AQ96RL7 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS13AQ96RL7 AC009947.2-201ENST00000444014 672 ntBASIC20.53■□□□□ 0.88
VPS13AQ96RL7 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC20.53■□□□□ 0.88
VPS13AQ96RL7 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.53■□□□□ 0.88
VPS13AQ96RL7 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS13AQ96RL7 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.53■□□□□ 0.88
VPS13AQ96RL7 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VPS13AQ96RL7 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS13AQ96RL7 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC20.53■□□□□ 0.88
VPS13AQ96RL7 KRT18P68-201ENST00000392293 1000 ntBASIC20.53■□□□□ 0.88
VPS13AQ96RL7 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC20.53■□□□□ 0.88
VPS13AQ96RL7 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
VPS13AQ96RL7 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VPS13AQ96RL7 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS13AQ96RL7 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS13AQ96RL7 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS13AQ96RL7 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC20.52■□□□□ 0.88
VPS13AQ96RL7 GGT1-206ENST00000404223 952 ntTSL 2 BASIC20.52■□□□□ 0.88
VPS13AQ96RL7 AC026396.1-201ENST00000419388 421 ntBASIC20.52■□□□□ 0.88
VPS13AQ96RL7 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC20.52■□□□□ 0.88
VPS13AQ96RL7 AC079089.2-201ENST00000531211 1277 ntBASIC20.52■□□□□ 0.88
VPS13AQ96RL7 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC20.52■□□□□ 0.88
VPS13AQ96RL7 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS13AQ96RL7 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS13AQ96RL7 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS13AQ96RL7 NXN-202ENST00000537628 1340 ntTSL 3 BASIC20.52■□□□□ 0.88
VPS13AQ96RL7 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC20.52■□□□□ 0.88
VPS13AQ96RL7 AC120498.8-201ENST00000614275 531 ntBASIC20.52■□□□□ 0.88
VPS13AQ96RL7 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
VPS13AQ96RL7 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
VPS13AQ96RL7 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
VPS13AQ96RL7 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC20.52■□□□□ 0.87
VPS13AQ96RL7 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
VPS13AQ96RL7 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC20.52■□□□□ 0.87
VPS13AQ96RL7 AC105020.6-201ENST00000621523 1217 ntBASIC20.52■□□□□ 0.87
VPS13AQ96RL7 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
VPS13AQ96RL7 PKM-204ENST00000449901 2526 ntTSL 2 BASIC20.51■□□□□ 0.87
VPS13AQ96RL7 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VPS13AQ96RL7 KRASP1-201ENST00000407852 552 ntBASIC20.51■□□□□ 0.87
VPS13AQ96RL7 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC20.51■□□□□ 0.87
VPS13AQ96RL7 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS13AQ96RL7 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS13AQ96RL7 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC20.51■□□□□ 0.87
VPS13AQ96RL7 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS13AQ96RL7 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VPS13AQ96RL7 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS13AQ96RL7 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VPS13AQ96RL7 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC20.5■□□□□ 0.87
VPS13AQ96RL7 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
VPS13AQ96RL7 AL358472.4-201ENST00000633140 710 ntBASIC20.5■□□□□ 0.87
VPS13AQ96RL7 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VPS13AQ96RL7 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VPS13AQ96RL7 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VPS13AQ96RL7 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC20.5■□□□□ 0.87
VPS13AQ96RL7 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC20.5■□□□□ 0.87
VPS13AQ96RL7 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VPS13AQ96RL7 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
VPS13AQ96RL7 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC20.5■□□□□ 0.87
VPS13AQ96RL7 AC124283.5-201ENST00000624661 1809 ntBASIC20.5■□□□□ 0.87
VPS13AQ96RL7 KRT18P56-201ENST00000507275 550 ntBASIC20.5■□□□□ 0.87
VPS13AQ96RL7 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
VPS13AQ96RL7 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC20.5■□□□□ 0.87
VPS13AQ96RL7 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
VPS13AQ96RL7 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC20.49■□□□□ 0.87
VPS13AQ96RL7 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
VPS13AQ96RL7 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VPS13AQ96RL7 AC091799.1-201ENST00000422823 811 ntBASIC20.49■□□□□ 0.87
VPS13AQ96RL7 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
VPS13AQ96RL7 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
VPS13AQ96RL7 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VPS13AQ96RL7 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
VPS13AQ96RL7 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
VPS13AQ96RL7 UNC93B2-201ENST00000285383 730 ntBASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms