Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC24.46■■□□□ 1.51
CHMP4CQ96CF2 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
CHMP4CQ96CF2 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
CHMP4CQ96CF2 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
CHMP4CQ96CF2 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC24.45■■□□□ 1.51
CHMP4CQ96CF2 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC24.45■■□□□ 1.51
CHMP4CQ96CF2 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC24.45■■□□□ 1.5
CHMP4CQ96CF2 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
CHMP4CQ96CF2 CYP2T1P-201ENST00000432607 1285 ntBASIC24.45■■□□□ 1.5
CHMP4CQ96CF2 AC016405.3-201ENST00000607710 860 ntBASIC24.45■■□□□ 1.5
CHMP4CQ96CF2 AC013268.1-206ENST00000638368 961 ntBASIC24.45■■□□□ 1.5
CHMP4CQ96CF2 AC112229.1-201ENST00000639295 961 ntBASIC24.45■■□□□ 1.5
CHMP4CQ96CF2 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC24.45■■□□□ 1.5
CHMP4CQ96CF2 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
CHMP4CQ96CF2 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC24.45■■□□□ 1.5
CHMP4CQ96CF2 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
CHMP4CQ96CF2 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC24.44■■□□□ 1.5
CHMP4CQ96CF2 PALM-207ENST00000590161 2137 ntTSL 4 BASIC24.44■■□□□ 1.5
CHMP4CQ96CF2 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC24.44■■□□□ 1.5
CHMP4CQ96CF2 AC093787.1-201ENST00000450396 207 ntBASIC24.44■■□□□ 1.5
CHMP4CQ96CF2 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC24.44■■□□□ 1.5
CHMP4CQ96CF2 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC24.44■■□□□ 1.5
CHMP4CQ96CF2 AC098934.4-201ENST00000564127 592 ntBASIC24.44■■□□□ 1.5
CHMP4CQ96CF2 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC24.44■■□□□ 1.5
CHMP4CQ96CF2 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
CHMP4CQ96CF2 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC24.44■■□□□ 1.5
CHMP4CQ96CF2 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
CHMP4CQ96CF2 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
CHMP4CQ96CF2 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
CHMP4CQ96CF2 RBM17P2-201ENST00000616397 1405 ntBASIC24.44■■□□□ 1.5
CHMP4CQ96CF2 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC24.43■■□□□ 1.5
CHMP4CQ96CF2 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
CHMP4CQ96CF2 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
CHMP4CQ96CF2 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
CHMP4CQ96CF2 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
CHMP4CQ96CF2 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC24.43■■□□□ 1.5
CHMP4CQ96CF2 GUSBP6-202ENST00000438529 1198 ntBASIC24.43■■□□□ 1.5
CHMP4CQ96CF2 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC24.43■■□□□ 1.5
CHMP4CQ96CF2 PHB2-213ENST00000546111 858 ntTSL 2 BASIC24.43■■□□□ 1.5
CHMP4CQ96CF2 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
CHMP4CQ96CF2 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC24.43■■□□□ 1.5
CHMP4CQ96CF2 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
CHMP4CQ96CF2 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC24.42■■□□□ 1.5
CHMP4CQ96CF2 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC24.42■■□□□ 1.5
CHMP4CQ96CF2 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC24.42■■□□□ 1.5
CHMP4CQ96CF2 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CHMP4CQ96CF2 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
CHMP4CQ96CF2 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CHMP4CQ96CF2 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
CHMP4CQ96CF2 TSPY6P-201ENST00000448518 926 ntBASIC24.42■■□□□ 1.5
CHMP4CQ96CF2 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC24.42■■□□□ 1.5
CHMP4CQ96CF2 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC24.42■■□□□ 1.5
CHMP4CQ96CF2 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
CHMP4CQ96CF2 SLC7A5P1-201ENST00000568957 537 ntBASIC24.42■■□□□ 1.5
CHMP4CQ96CF2 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC24.42■■□□□ 1.5
CHMP4CQ96CF2 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC24.42■■□□□ 1.5
CHMP4CQ96CF2 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC24.42■■□□□ 1.5
CHMP4CQ96CF2 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC24.42■■□□□ 1.5
CHMP4CQ96CF2 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC24.42■■□□□ 1.5
CHMP4CQ96CF2 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CHMP4CQ96CF2 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
CHMP4CQ96CF2 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
CHMP4CQ96CF2 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
CHMP4CQ96CF2 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
CHMP4CQ96CF2 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC24.41■■□□□ 1.5
CHMP4CQ96CF2 AF201337.1-201ENST00000520239 748 ntBASIC24.41■■□□□ 1.5
CHMP4CQ96CF2 EMC9-206ENST00000560403 872 ntTSL 2 BASIC24.41■■□□□ 1.5
CHMP4CQ96CF2 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC24.41■■□□□ 1.5
CHMP4CQ96CF2 KRT16P2-201ENST00000414673 1423 ntBASIC24.41■■□□□ 1.5
CHMP4CQ96CF2 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
CHMP4CQ96CF2 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC24.41■■□□□ 1.5
CHMP4CQ96CF2 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
CHMP4CQ96CF2 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC24.4■■□□□ 1.5
CHMP4CQ96CF2 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC24.4■■□□□ 1.5
CHMP4CQ96CF2 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
CHMP4CQ96CF2 APTR-205ENST00000447009 902 ntTSL 2 BASIC24.4■■□□□ 1.5
CHMP4CQ96CF2 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC24.4■■□□□ 1.5
CHMP4CQ96CF2 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
CHMP4CQ96CF2 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
CHMP4CQ96CF2 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC24.4■■□□□ 1.5
CHMP4CQ96CF2 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
CHMP4CQ96CF2 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC24.4■■□□□ 1.5
CHMP4CQ96CF2 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC24.4■■□□□ 1.5
CHMP4CQ96CF2 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC24.4■■□□□ 1.5
CHMP4CQ96CF2 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC24.4■■□□□ 1.5
CHMP4CQ96CF2 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC24.4■■□□□ 1.5
CHMP4CQ96CF2 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
CHMP4CQ96CF2 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
CHMP4CQ96CF2 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC24.39■■□□□ 1.5
CHMP4CQ96CF2 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC24.39■■□□□ 1.5
CHMP4CQ96CF2 AC121338.2-201ENST00000622535 1744 ntBASIC24.39■■□□□ 1.5
CHMP4CQ96CF2 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
CHMP4CQ96CF2 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
CHMP4CQ96CF2 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC24.39■■□□□ 1.49
CHMP4CQ96CF2 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC24.39■■□□□ 1.49
CHMP4CQ96CF2 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC24.39■■□□□ 1.49
CHMP4CQ96CF2 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC24.39■■□□□ 1.49
CHMP4CQ96CF2 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
CHMP4CQ96CF2 AC006128.1-201ENST00000624704 1661 ntBASIC24.39■■□□□ 1.49
CHMP4CQ96CF2 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC24.39■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms