Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
ZNF540Q8NDQ6 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
ZNF540Q8NDQ6 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
ZNF540Q8NDQ6 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC18.98■□□□□ 0.63
ZNF540Q8NDQ6 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
ZNF540Q8NDQ6 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
ZNF540Q8NDQ6 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
ZNF540Q8NDQ6 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
ZNF540Q8NDQ6 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
ZNF540Q8NDQ6 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
ZNF540Q8NDQ6 USP39-204ENST00000409766 2033 ntTSL 2 BASIC18.98■□□□□ 0.63
ZNF540Q8NDQ6 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
ZNF540Q8NDQ6 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
ZNF540Q8NDQ6 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC18.98■□□□□ 0.63
ZNF540Q8NDQ6 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
ZNF540Q8NDQ6 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
ZNF540Q8NDQ6 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
ZNF540Q8NDQ6 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC18.97■□□□□ 0.63
ZNF540Q8NDQ6 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
ZNF540Q8NDQ6 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC18.97■□□□□ 0.63
ZNF540Q8NDQ6 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
ZNF540Q8NDQ6 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC18.97■□□□□ 0.63
ZNF540Q8NDQ6 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
ZNF540Q8NDQ6 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
ZNF540Q8NDQ6 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC18.97■□□□□ 0.63
ZNF540Q8NDQ6 AL034346.1-201ENST00000568244 1277 ntBASIC18.97■□□□□ 0.63
ZNF540Q8NDQ6 AC068587.7-201ENST00000641602 218 ntBASIC18.97■□□□□ 0.63
ZNF540Q8NDQ6 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.97■□□□□ 0.63
ZNF540Q8NDQ6 AC007225.1-201ENST00000566331 1836 ntBASIC18.97■□□□□ 0.63
ZNF540Q8NDQ6 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.97■□□□□ 0.63
ZNF540Q8NDQ6 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
ZNF540Q8NDQ6 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
ZNF540Q8NDQ6 AC121338.2-201ENST00000622535 1744 ntBASIC18.97■□□□□ 0.63
ZNF540Q8NDQ6 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
ZNF540Q8NDQ6 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC18.97■□□□□ 0.63
ZNF540Q8NDQ6 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC18.97■□□□□ 0.63
ZNF540Q8NDQ6 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
ZNF540Q8NDQ6 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ZNF540Q8NDQ6 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
ZNF540Q8NDQ6 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
ZNF540Q8NDQ6 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC18.96■□□□□ 0.63
ZNF540Q8NDQ6 AC133637.1-201ENST00000624115 1537 ntBASIC18.96■□□□□ 0.63
ZNF540Q8NDQ6 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
ZNF540Q8NDQ6 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ZNF540Q8NDQ6 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC18.96■□□□□ 0.63
ZNF540Q8NDQ6 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
ZNF540Q8NDQ6 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ZNF540Q8NDQ6 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
ZNF540Q8NDQ6 DET1-207ENST00000564406 2315 ntTSL 2 BASIC18.96■□□□□ 0.63
ZNF540Q8NDQ6 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
ZNF540Q8NDQ6 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
ZNF540Q8NDQ6 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
ZNF540Q8NDQ6 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ZNF540Q8NDQ6 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
ZNF540Q8NDQ6 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
ZNF540Q8NDQ6 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ZNF540Q8NDQ6 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ZNF540Q8NDQ6 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ZNF540Q8NDQ6 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ZNF540Q8NDQ6 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC18.95■□□□□ 0.62
ZNF540Q8NDQ6 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ZNF540Q8NDQ6 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
ZNF540Q8NDQ6 AC008764.7-201ENST00000593779 1081 ntBASIC18.95■□□□□ 0.62
ZNF540Q8NDQ6 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC18.95■□□□□ 0.62
ZNF540Q8NDQ6 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
ZNF540Q8NDQ6 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
ZNF540Q8NDQ6 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
ZNF540Q8NDQ6 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ZNF540Q8NDQ6 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
ZNF540Q8NDQ6 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
ZNF540Q8NDQ6 MCC-208ENST00000514701 2855 ntTSL 2 BASIC18.95■□□□□ 0.62
ZNF540Q8NDQ6 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
ZNF540Q8NDQ6 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC18.94■□□□□ 0.62
ZNF540Q8NDQ6 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC18.94■□□□□ 0.62
ZNF540Q8NDQ6 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC18.94■□□□□ 0.62
ZNF540Q8NDQ6 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
ZNF540Q8NDQ6 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
ZNF540Q8NDQ6 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
ZNF540Q8NDQ6 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC18.94■□□□□ 0.62
ZNF540Q8NDQ6 SMG8-203ENST00000578922 2178 ntBASIC18.94■□□□□ 0.62
ZNF540Q8NDQ6 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC18.94■□□□□ 0.62
ZNF540Q8NDQ6 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
ZNF540Q8NDQ6 AC087239.1-201ENST00000622671 572 ntBASIC18.94■□□□□ 0.62
ZNF540Q8NDQ6 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
ZNF540Q8NDQ6 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
ZNF540Q8NDQ6 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
ZNF540Q8NDQ6 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
ZNF540Q8NDQ6 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
ZNF540Q8NDQ6 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC18.94■□□□□ 0.62
ZNF540Q8NDQ6 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
ZNF540Q8NDQ6 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
ZNF540Q8NDQ6 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
ZNF540Q8NDQ6 STX4-202ENST00000394998 1498 ntTSL 2 BASIC18.94■□□□□ 0.62
ZNF540Q8NDQ6 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
ZNF540Q8NDQ6 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC18.94■□□□□ 0.62
ZNF540Q8NDQ6 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
ZNF540Q8NDQ6 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC18.94■□□□□ 0.62
ZNF540Q8NDQ6 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC18.94■□□□□ 0.62
ZNF540Q8NDQ6 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
ZNF540Q8NDQ6 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms