Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
VPS52Q8N1B4 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
VPS52Q8N1B4 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
VPS52Q8N1B4 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC22.29■■□□□ 1.16
VPS52Q8N1B4 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC22.29■■□□□ 1.16
VPS52Q8N1B4 AL158047.1-201ENST00000445918 881 ntBASIC22.29■■□□□ 1.16
VPS52Q8N1B4 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC22.29■■□□□ 1.16
VPS52Q8N1B4 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC22.29■■□□□ 1.16
VPS52Q8N1B4 FAM21FP-204ENST00000608637 956 ntBASIC22.29■■□□□ 1.16
VPS52Q8N1B4 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
VPS52Q8N1B4 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
VPS52Q8N1B4 BID-212ENST00000614949 1988 ntTSL 5 BASIC22.29■■□□□ 1.16
VPS52Q8N1B4 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC22.28■■□□□ 1.16
VPS52Q8N1B4 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
VPS52Q8N1B4 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC22.28■■□□□ 1.16
VPS52Q8N1B4 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
VPS52Q8N1B4 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC22.28■■□□□ 1.16
VPS52Q8N1B4 AC245052.3-201ENST00000450182 901 ntBASIC22.28■■□□□ 1.16
VPS52Q8N1B4 GATS-209ENST00000454084 1030 ntTSL 3 BASIC22.28■■□□□ 1.16
VPS52Q8N1B4 CDV3P1-201ENST00000471403 739 ntBASIC22.28■■□□□ 1.16
VPS52Q8N1B4 AC026366.1-201ENST00000488803 879 ntBASIC22.28■■□□□ 1.16
VPS52Q8N1B4 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC22.28■■□□□ 1.16
VPS52Q8N1B4 AC142381.4-202ENST00000563973 229 ntBASIC22.28■■□□□ 1.16
VPS52Q8N1B4 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
VPS52Q8N1B4 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
VPS52Q8N1B4 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
VPS52Q8N1B4 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
VPS52Q8N1B4 AC026471.6-201ENST00000622954 1905 ntBASIC22.27■■□□□ 1.16
VPS52Q8N1B4 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
VPS52Q8N1B4 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.16
VPS52Q8N1B4 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC22.27■■□□□ 1.16
VPS52Q8N1B4 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC22.27■■□□□ 1.16
VPS52Q8N1B4 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
VPS52Q8N1B4 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC22.27■■□□□ 1.16
VPS52Q8N1B4 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
VPS52Q8N1B4 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC22.27■■□□□ 1.16
VPS52Q8N1B4 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC22.27■■□□□ 1.16
VPS52Q8N1B4 AC007375.3-201ENST00000600936 2314 ntBASIC22.27■■□□□ 1.16
VPS52Q8N1B4 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
VPS52Q8N1B4 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC22.26■■□□□ 1.15
VPS52Q8N1B4 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC22.26■■□□□ 1.15
VPS52Q8N1B4 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
VPS52Q8N1B4 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC22.26■■□□□ 1.15
VPS52Q8N1B4 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
VPS52Q8N1B4 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC22.26■■□□□ 1.15
VPS52Q8N1B4 AP003097.1-201ENST00000530657 1135 ntBASIC22.26■■□□□ 1.15
VPS52Q8N1B4 CYP2T3P-201ENST00000601990 817 ntBASIC22.26■■□□□ 1.15
VPS52Q8N1B4 MMD2-204ENST00000612910 778 ntTSL 5 BASIC22.26■■□□□ 1.15
VPS52Q8N1B4 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
VPS52Q8N1B4 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
VPS52Q8N1B4 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC22.26■■□□□ 1.15
VPS52Q8N1B4 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC22.26■■□□□ 1.15
VPS52Q8N1B4 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
VPS52Q8N1B4 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
VPS52Q8N1B4 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC22.25■■□□□ 1.15
VPS52Q8N1B4 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC22.25■■□□□ 1.15
VPS52Q8N1B4 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC22.25■■□□□ 1.15
VPS52Q8N1B4 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
VPS52Q8N1B4 AC100791.3-201ENST00000617619 330 ntBASIC22.25■■□□□ 1.15
VPS52Q8N1B4 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
VPS52Q8N1B4 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
VPS52Q8N1B4 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
VPS52Q8N1B4 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC22.25■■□□□ 1.15
VPS52Q8N1B4 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
VPS52Q8N1B4 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
VPS52Q8N1B4 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
VPS52Q8N1B4 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
VPS52Q8N1B4 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC22.24■■□□□ 1.15
VPS52Q8N1B4 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
VPS52Q8N1B4 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC22.24■■□□□ 1.15
VPS52Q8N1B4 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC22.24■■□□□ 1.15
VPS52Q8N1B4 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC22.24■■□□□ 1.15
VPS52Q8N1B4 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
VPS52Q8N1B4 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC22.24■■□□□ 1.15
VPS52Q8N1B4 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
VPS52Q8N1B4 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC22.24■■□□□ 1.15
VPS52Q8N1B4 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
VPS52Q8N1B4 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
VPS52Q8N1B4 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
VPS52Q8N1B4 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
VPS52Q8N1B4 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC22.23■■□□□ 1.15
VPS52Q8N1B4 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC22.23■■□□□ 1.15
VPS52Q8N1B4 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
VPS52Q8N1B4 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC22.23■■□□□ 1.15
VPS52Q8N1B4 NME6-213ENST00000451657 871 ntTSL 2 BASIC22.23■■□□□ 1.15
VPS52Q8N1B4 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
VPS52Q8N1B4 AC073648.6-201ENST00000641589 218 ntBASIC22.23■■□□□ 1.15
VPS52Q8N1B4 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
VPS52Q8N1B4 AC010542.4-201ENST00000563151 1910 ntBASIC22.23■■□□□ 1.15
VPS52Q8N1B4 FBXW4P1-201ENST00000426721 2239 ntBASIC22.23■■□□□ 1.15
VPS52Q8N1B4 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC22.23■■□□□ 1.15
VPS52Q8N1B4 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
VPS52Q8N1B4 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
VPS52Q8N1B4 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
VPS52Q8N1B4 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC22.22■■□□□ 1.15
VPS52Q8N1B4 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC22.22■■□□□ 1.15
VPS52Q8N1B4 BAALC-201ENST00000297574 801 ntTSL 3 BASIC22.22■■□□□ 1.15
VPS52Q8N1B4 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
VPS52Q8N1B4 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
VPS52Q8N1B4 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC22.22■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms