Protein–RNA interactions for Protein: P48412

UPF3, Nonsense-mediated mRNA decay protein 3, yeastyeast

Known RBP Predictions only

Length 387 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UPF3P48412 YBR197CYBR197C 654 nt2.73□□□□□ -1.97
UPF3P48412 Q0017Q0017 162 nt2.73□□□□□ -1.97
UPF3P48412 HOS4YIL112W 3252 nt2.73□□□□□ -1.97
UPF3P48412 SWA2YDR320C 2007 nt2.73□□□□□ -1.97
UPF3P48412 YDR210W-AYDR210W-A 1317 nt2.72□□□□□ -1.97
UPF3P48412 GEA1YJR031C 4227 nt2.72□□□□□ -1.97
UPF3P48412 MET32YDR253C 576 nt2.72□□□□□ -1.97
UPF3P48412 BET4YJL031C 984 nt2.72□□□□□ -1.97
UPF3P48412 YJL202CYJL202C 348 nt2.72□□□□□ -1.97
UPF3P48412 YMR013C-AYMR013C-A 150 nt2.72□□□□□ -1.97
UPF3P48412 RIO2YNL207W 1278 nt2.72□□□□□ -1.97
UPF3P48412 YPL080CYPL080C 327 nt2.72□□□□□ -1.97
UPF3P48412 MEI5YPL121C 669 nt2.72□□□□□ -1.97
UPF3P48412 CDC20YGL116W 1833 nt2.72□□□□□ -1.97
UPF3P48412 ECM25YJL201W 1800 nt2.72□□□□□ -1.97
UPF3P48412 YDR098C-BYDR098C-B 5268 nt2.72□□□□□ -1.97
UPF3P48412 YDR210C-DYDR210C-D 5268 nt2.72□□□□□ -1.97
UPF3P48412 YDR316W-BYDR316W-B 5268 nt2.72□□□□□ -1.97
UPF3P48412 YDR365W-BYDR365W-B 5268 nt2.72□□□□□ -1.97
UPF3P48412 YER138CYER138C 5268 nt2.72□□□□□ -1.97
UPF3P48412 YER160CYER160C 5268 nt2.72□□□□□ -1.97
UPF3P48412 YGR038C-BYGR038C-B 5268 nt2.72□□□□□ -1.97
UPF3P48412 YGR161C-DYGR161C-D 5268 nt2.72□□□□□ -1.97
UPF3P48412 YJR027WYJR027W 5268 nt2.72□□□□□ -1.97
UPF3P48412 YLR157C-BYLR157C-B 5268 nt2.72□□□□□ -1.97
UPF3P48412 YML039WYML039W 5268 nt2.72□□□□□ -1.97
UPF3P48412 YML045WYML045W 5268 nt2.72□□□□□ -1.97
UPF3P48412 YMR050CYMR050C 5268 nt2.72□□□□□ -1.97
UPF3P48412 YOL103W-BYOL103W-B 5268 nt2.72□□□□□ -1.97
UPF3P48412 YBR012W-BYBR012W-B 5271 nt2.72□□□□□ -1.97
UPF3P48412 YOR142W-BYOR142W-B 5268 nt2.72□□□□□ -1.97
UPF3P48412 YPL257W-BYPL257W-B 5268 nt2.72□□□□□ -1.97
UPF3P48412 YPR158W-BYPR158W-B 5271 nt2.72□□□□□ -1.97
UPF3P48412 MPO1YGL010W 525 nt2.71□□□□□ -1.98
UPF3P48412 YGR293CYGR293C 462 nt2.71□□□□□ -1.98
UPF3P48412 BUD19YJL188C 309 nt2.71□□□□□ -1.98
UPF3P48412 VPH2YKL119C 648 nt2.71□□□□□ -1.98
UPF3P48412 YKR033CYKR033C 426 nt2.71□□□□□ -1.98
UPF3P48412 ARV1YLR242C 966 nt2.71□□□□□ -1.98
UPF3P48412 SWS2YNL081C 432 nt2.71□□□□□ -1.98
UPF3P48412 YPR172WYPR172W 603 nt2.71□□□□□ -1.98
UPF3P48412 PSO2YMR137C 1986 nt2.7□□□□□ -1.98
UPF3P48412 PES4YFR023W 1836 nt2.7□□□□□ -1.98
UPF3P48412 TOP2YNL088W 4287 nt2.7□□□□□ -1.98
UPF3P48412 EDS1YBR033W 2760 nt2.7□□□□□ -1.98
UPF3P48412 YIR020CYIR020C 303 nt2.7□□□□□ -1.98
UPF3P48412 ILM1YJR118C 612 nt2.7□□□□□ -1.98
UPF3P48412 COA4YLR218C 453 nt2.7□□□□□ -1.98
UPF3P48412 BER1YLR412W 825 nt2.7□□□□□ -1.98
UPF3P48412 LSM2YBL026W 288 nt2.7□□□□□ -1.98
UPF3P48412 YDR209CYDR209C 414 nt2.69□□□□□ -1.98
UPF3P48412 GPI8YDR331W 1236 nt2.69□□□□□ -1.98
UPF3P48412 YIL174WYIL174W 228 nt2.69□□□□□ -1.98
UPF3P48412 IST3YIR005W 447 nt2.69□□□□□ -1.98
UPF3P48412 YJL222W-AYJL222W-A 228 nt2.69□□□□□ -1.98
UPF3P48412 RPS29AYLR388W 171 nt2.69□□□□□ -1.98
UPF3P48412 RPL36AYMR194W 303 nt2.69□□□□□ -1.98
UPF3P48412 TRM7YBR061C 933 nt2.69□□□□□ -1.98
UPF3P48412 LOA1YPR139C 903 nt2.69□□□□□ -1.98
UPF3P48412 YBR209WYBR209W 318 nt2.69□□□□□ -1.98
UPF3P48412 YNL018CYNL018C 1839 nt2.68□□□□□ -1.98
UPF3P48412 ORC1YML065W 2745 nt2.68□□□□□ -1.98
UPF3P48412 RTR2YDR066C 591 nt2.68□□□□□ -1.98
UPF3P48412 YER038W-AYER038W-A 381 nt2.68□□□□□ -1.98
UPF3P48412 PNC1YGL037C 651 nt2.68□□□□□ -1.98
UPF3P48412 YGR050CYGR050C 357 nt2.68□□□□□ -1.98
UPF3P48412 STE18YJR086W 333 nt2.68□□□□□ -1.98
UPF3P48412 IGO1YNL157W 507 nt2.68□□□□□ -1.98
UPF3P48412 CAT5YOR125C 702 nt2.68□□□□□ -1.98
UPF3P48412 MRD1YPR112C 2664 nt2.68□□□□□ -1.98
UPF3P48412 PRP6YBR055C 2700 nt2.68□□□□□ -1.98
UPF3P48412 SSE1YPL106C 2082 nt2.67□□□□□ -1.98
UPF3P48412 PSD2YGR170W 3417 nt2.67□□□□□ -1.98
UPF3P48412 NDD1YOR372C 1665 nt2.67□□□□□ -1.98
UPF3P48412 BNR1YIL159W 4128 nt2.67□□□□□ -1.98
UPF3P48412 SPC1YJR010C-A 285 nt2.67□□□□□ -1.98
UPF3P48412 YAL042C-AYAL042C-A 378 nt2.67□□□□□ -1.98
UPF3P48412 YNL146C-AYNL146C-A 195 nt2.67□□□□□ -1.98
UPF3P48412 YOR283WYOR283W 693 nt2.67□□□□□ -1.98
UPF3P48412 FAR11YNL127W 2862 nt2.67□□□□□ -1.98
UPF3P48412 HRD3YLR207W 2502 nt2.66□□□□□ -1.98
UPF3P48412 YDL016CYDL016C 303 nt2.66□□□□□ -1.98
UPF3P48412 LAG1YHL003C 1236 nt2.66□□□□□ -1.98
UPF3P48412 CIC1YHR052W 1131 nt2.66□□□□□ -1.98
UPF3P48412 RPS22AYJL190C 393 nt2.66□□□□□ -1.98
UPF3P48412 TOA1YOR194C 861 nt2.66□□□□□ -1.98
UPF3P48412 RCN2YOR220W 798 nt2.66□□□□□ -1.98
UPF3P48412 YPL039WYPL039W 951 nt2.66□□□□□ -1.98
UPF3P48412 YKU80YMR106C 1890 nt2.66□□□□□ -1.98
UPF3P48412 MMS1YPR164W 4224 nt2.66□□□□□ -1.98
UPF3P48412 YDR186CYDR186C 2634 nt2.65□□□□□ -1.98
UPF3P48412 YER119C-AYER119C-A 372 nt2.65□□□□□ -1.99
UPF3P48412 ERP6YGL002W 651 nt2.65□□□□□ -1.99
UPF3P48412 GIC1YHR061C 945 nt2.65□□□□□ -1.99
UPF3P48412 UBX4YMR067C 1251 nt2.65□□□□□ -1.99
UPF3P48412 INP53YOR109W 3324 nt2.65□□□□□ -1.99
UPF3P48412 YOR296WYOR296W 3870 nt2.65□□□□□ -1.99
UPF3P48412 YBL005W-BYBL005W-B 5268 nt2.65□□□□□ -1.99
UPF3P48412 AXL1YPR122W 3627 nt2.64□□□□□ -1.99
UPF3P48412 VPS16YPL045W 2397 nt2.64□□□□□ -1.99
Retrieved 100 of 7,029 protein–RNA pairs in 23.1 ms