Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
SOX3P41225 UQCRFS1P1-201ENST00000435169 820 ntBASIC19.32■□□□□ 0.68
SOX3P41225 CNN2P6-201ENST00000439038 900 ntBASIC19.32■□□□□ 0.68
SOX3P41225 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SOX3P41225 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC19.32■□□□□ 0.68
SOX3P41225 TERF1P5-201ENST00000477545 1207 ntBASIC19.32■□□□□ 0.68
SOX3P41225 GXYLT1P5-201ENST00000614548 1189 ntBASIC19.32■□□□□ 0.68
SOX3P41225 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SOX3P41225 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SOX3P41225 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
SOX3P41225 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SOX3P41225 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SOX3P41225 NARF-205ENST00000412079 1760 ntTSL 5 BASIC19.32■□□□□ 0.68
SOX3P41225 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC19.32■□□□□ 0.68
SOX3P41225 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SOX3P41225 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
SOX3P41225 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SOX3P41225 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SOX3P41225 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SOX3P41225 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
SOX3P41225 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SOX3P41225 ID1-201ENST00000376105 1233 ntBASIC19.31■□□□□ 0.68
SOX3P41225 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC19.31■□□□□ 0.68
SOX3P41225 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC19.31■□□□□ 0.68
SOX3P41225 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC19.31■□□□□ 0.68
SOX3P41225 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC19.31■□□□□ 0.68
SOX3P41225 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SOX3P41225 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SOX3P41225 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SOX3P41225 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
SOX3P41225 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SOX3P41225 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SOX3P41225 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SOX3P41225 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SOX3P41225 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SOX3P41225 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SOX3P41225 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC19.3■□□□□ 0.68
SOX3P41225 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC19.3■□□□□ 0.68
SOX3P41225 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
SOX3P41225 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC19.3■□□□□ 0.68
SOX3P41225 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
SOX3P41225 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SOX3P41225 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC19.3■□□□□ 0.68
SOX3P41225 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC19.3■□□□□ 0.68
SOX3P41225 PARP1-210ENST00000629232 477 ntTSL 5 BASIC19.3■□□□□ 0.68
SOX3P41225 AC013268.1-206ENST00000638368 961 ntBASIC19.3■□□□□ 0.68
SOX3P41225 AC112229.1-201ENST00000639295 961 ntBASIC19.3■□□□□ 0.68
SOX3P41225 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SOX3P41225 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.3■□□□□ 0.68
SOX3P41225 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.3■□□□□ 0.68
SOX3P41225 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC19.3■□□□□ 0.68
SOX3P41225 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SOX3P41225 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SOX3P41225 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SOX3P41225 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SOX3P41225 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
SOX3P41225 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.3■□□□□ 0.68
SOX3P41225 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SOX3P41225 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC19.29■□□□□ 0.68
SOX3P41225 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SOX3P41225 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SOX3P41225 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SOX3P41225 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC19.29■□□□□ 0.68
SOX3P41225 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SOX3P41225 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC19.29■□□□□ 0.68
SOX3P41225 AC005181.1-201ENST00000604782 1256 ntBASIC19.29■□□□□ 0.68
SOX3P41225 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC19.29■□□□□ 0.68
SOX3P41225 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC19.29■□□□□ 0.68
SOX3P41225 FGF8-207ENST00000618991 856 ntTSL 3 BASIC19.29■□□□□ 0.68
SOX3P41225 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
SOX3P41225 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.29■□□□□ 0.68
SOX3P41225 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC19.29■□□□□ 0.68
SOX3P41225 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SOX3P41225 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
SOX3P41225 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.28■□□□□ 0.68
SOX3P41225 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SOX3P41225 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SOX3P41225 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SOX3P41225 STX5-203ENST00000394690 1568 ntTSL 5 BASIC19.28■□□□□ 0.68
SOX3P41225 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC19.28■□□□□ 0.68
SOX3P41225 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC19.28■□□□□ 0.68
SOX3P41225 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SOX3P41225 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SOX3P41225 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
SOX3P41225 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
SOX3P41225 HLA-L-209ENST00000420110 1011 ntBASIC19.28■□□□□ 0.68
SOX3P41225 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC19.28■□□□□ 0.68
SOX3P41225 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC19.28■□□□□ 0.68
SOX3P41225 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC19.28■□□□□ 0.68
SOX3P41225 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SOX3P41225 AL050303.2-201ENST00000619798 666 ntBASIC19.28■□□□□ 0.68
SOX3P41225 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC19.28■□□□□ 0.68
SOX3P41225 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC19.28■□□□□ 0.68
SOX3P41225 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC19.28■□□□□ 0.68
SOX3P41225 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC19.28■□□□□ 0.68
SOX3P41225 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SOX3P41225 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SOX3P41225 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SOX3P41225 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SOX3P41225 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms