Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CIITAP33076 KRT17P1-201ENST00000399211 1546 ntBASIC23.26■■□□□ 1.31
CIITAP33076 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CIITAP33076 STAC-204ENST00000457375 1366 ntTSL 2 BASIC23.26■■□□□ 1.31
CIITAP33076 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC23.26■■□□□ 1.31
CIITAP33076 AC005229.4-201ENST00000610085 2198 ntBASIC23.25■■□□□ 1.31
CIITAP33076 AC087633.2-202ENST00000565166 1439 ntBASIC23.25■■□□□ 1.31
CIITAP33076 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
CIITAP33076 ERF-202ENST00000440177 2032 ntTSL 2 BASIC23.25■■□□□ 1.31
CIITAP33076 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CIITAP33076 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC23.25■■□□□ 1.31
CIITAP33076 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC23.25■■□□□ 1.31
CIITAP33076 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC23.25■■□□□ 1.31
CIITAP33076 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC23.25■■□□□ 1.31
CIITAP33076 PPP1R14BP2-201ENST00000426284 444 ntBASIC23.25■■□□□ 1.31
CIITAP33076 AC069152.1-201ENST00000438030 544 ntBASIC23.25■■□□□ 1.31
CIITAP33076 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CIITAP33076 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC23.25■■□□□ 1.31
CIITAP33076 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC23.25■■□□□ 1.31
CIITAP33076 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC23.25■■□□□ 1.31
CIITAP33076 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC23.25■■□□□ 1.31
CIITAP33076 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
CIITAP33076 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC23.25■■□□□ 1.31
CIITAP33076 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CIITAP33076 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC23.25■■□□□ 1.31
CIITAP33076 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CIITAP33076 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC23.24■■□□□ 1.31
CIITAP33076 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC23.24■■□□□ 1.31
CIITAP33076 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CIITAP33076 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC23.24■■□□□ 1.31
CIITAP33076 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CIITAP33076 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CIITAP33076 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CIITAP33076 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CIITAP33076 AC098934.4-201ENST00000564127 592 ntBASIC23.24■■□□□ 1.31
CIITAP33076 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC23.24■■□□□ 1.31
CIITAP33076 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC23.24■■□□□ 1.31
CIITAP33076 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC23.24■■□□□ 1.31
CIITAP33076 AC133041.1-202ENST00000642053 222 ntBASIC23.24■■□□□ 1.31
CIITAP33076 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
CIITAP33076 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CIITAP33076 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC23.24■■□□□ 1.31
CIITAP33076 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC23.24■■□□□ 1.31
CIITAP33076 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
CIITAP33076 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
CIITAP33076 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CIITAP33076 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC23.23■■□□□ 1.31
CIITAP33076 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC23.23■■□□□ 1.31
CIITAP33076 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC23.23■■□□□ 1.31
CIITAP33076 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC23.23■■□□□ 1.31
CIITAP33076 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC23.23■■□□□ 1.31
CIITAP33076 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC23.23■■□□□ 1.31
CIITAP33076 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
CIITAP33076 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC23.23■■□□□ 1.31
CIITAP33076 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CIITAP33076 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CIITAP33076 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CIITAP33076 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC23.22■■□□□ 1.31
CIITAP33076 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC23.22■■□□□ 1.31
CIITAP33076 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
CIITAP33076 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC23.22■■□□□ 1.31
CIITAP33076 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC23.22■■□□□ 1.31
CIITAP33076 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CIITAP33076 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
CIITAP33076 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC23.22■■□□□ 1.31
CIITAP33076 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CIITAP33076 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC23.22■■□□□ 1.31
CIITAP33076 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC23.22■■□□□ 1.31
CIITAP33076 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
CIITAP33076 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC23.22■■□□□ 1.31
CIITAP33076 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
CIITAP33076 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC23.21■■□□□ 1.31
CIITAP33076 AL589743.5-201ENST00000616611 1050 ntBASIC23.21■■□□□ 1.31
CIITAP33076 MYC-209ENST00000641252 345 ntBASIC23.21■■□□□ 1.31
CIITAP33076 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC23.21■■□□□ 1.31
CIITAP33076 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC23.21■■□□□ 1.31
CIITAP33076 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
CIITAP33076 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
CIITAP33076 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC23.2■■□□□ 1.3
CIITAP33076 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CIITAP33076 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
CIITAP33076 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC23.2■■□□□ 1.3
CIITAP33076 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC23.2■■□□□ 1.3
CIITAP33076 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC23.2■■□□□ 1.3
CIITAP33076 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC23.2■■□□□ 1.3
CIITAP33076 DENND3-207ENST00000518347 850 ntTSL 2 BASIC23.2■■□□□ 1.3
CIITAP33076 RGMA-211ENST00000557420 989 ntTSL 3 BASIC23.2■■□□□ 1.3
CIITAP33076 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC23.2■■□□□ 1.3
CIITAP33076 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC23.2■■□□□ 1.3
CIITAP33076 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CIITAP33076 AC105020.6-201ENST00000621523 1217 ntBASIC23.2■■□□□ 1.3
CIITAP33076 MIR2861-201ENST00000636310 90 ntBASIC23.2■■□□□ 1.3
CIITAP33076 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CIITAP33076 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
CIITAP33076 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
CIITAP33076 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CIITAP33076 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
CIITAP33076 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC23.19■■□□□ 1.3
CIITAP33076 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CIITAP33076 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC23.19■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms