Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
APOBP04114 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
APOBP04114 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
APOBP04114 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
APOBP04114 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
APOBP04114 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
APOBP04114 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
APOBP04114 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
APOBP04114 AC120498.8-201ENST00000614275 531 ntBASIC12.99□□□□□ -0.33
APOBP04114 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
APOBP04114 PKM-204ENST00000449901 2526 ntTSL 2 BASIC12.99□□□□□ -0.33
APOBP04114 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
APOBP04114 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC12.99□□□□□ -0.33
APOBP04114 AC139530.1-201ENST00000575312 1977 ntBASIC12.99□□□□□ -0.33
APOBP04114 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
APOBP04114 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC12.99□□□□□ -0.33
APOBP04114 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC12.99□□□□□ -0.33
APOBP04114 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC12.99□□□□□ -0.33
APOBP04114 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC12.99□□□□□ -0.33
APOBP04114 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
APOBP04114 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
APOBP04114 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
APOBP04114 AC245052.3-201ENST00000450182 901 ntBASIC12.98□□□□□ -0.33
APOBP04114 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
APOBP04114 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC12.98□□□□□ -0.33
APOBP04114 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
APOBP04114 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC12.98□□□□□ -0.33
APOBP04114 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC12.98□□□□□ -0.33
APOBP04114 AC079598.2-202ENST00000546624 1451 ntBASIC12.98□□□□□ -0.33
APOBP04114 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
APOBP04114 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC12.98□□□□□ -0.33
APOBP04114 AC007322.3-201ENST00000426526 701 ntBASIC12.98□□□□□ -0.33
APOBP04114 RBM17P1-201ENST00000453646 1190 ntBASIC12.98□□□□□ -0.33
APOBP04114 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
APOBP04114 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
APOBP04114 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
APOBP04114 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
APOBP04114 C11orf96-202ENST00000528572 1834 ntBASIC12.98□□□□□ -0.33
APOBP04114 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
APOBP04114 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC12.98□□□□□ -0.33
APOBP04114 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC12.98□□□□□ -0.33
APOBP04114 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC12.98□□□□□ -0.33
APOBP04114 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC12.98□□□□□ -0.33
APOBP04114 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
APOBP04114 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC12.98□□□□□ -0.33
APOBP04114 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
APOBP04114 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
APOBP04114 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
APOBP04114 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
APOBP04114 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
APOBP04114 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
APOBP04114 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
APOBP04114 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC12.98□□□□□ -0.33
APOBP04114 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
APOBP04114 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
APOBP04114 HTR7P1-201ENST00000538670 1336 ntBASIC12.97□□□□□ -0.33
APOBP04114 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC12.97□□□□□ -0.33
APOBP04114 AC006557.6-201ENST00000623071 864 ntBASIC12.97□□□□□ -0.33
APOBP04114 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
APOBP04114 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
APOBP04114 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
APOBP04114 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC12.97□□□□□ -0.33
APOBP04114 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
APOBP04114 FAM197Y1-201ENST00000421178 764 ntBASIC12.97□□□□□ -0.33
APOBP04114 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
APOBP04114 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC12.97□□□□□ -0.33
APOBP04114 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
APOBP04114 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
APOBP04114 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
APOBP04114 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
APOBP04114 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC12.97□□□□□ -0.33
APOBP04114 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC12.97□□□□□ -0.33
APOBP04114 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
APOBP04114 DECR2-212ENST00000627716 352 ntTSL 2 BASIC12.97□□□□□ -0.33
APOBP04114 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
APOBP04114 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC12.96□□□□□ -0.33
APOBP04114 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC12.96□□□□□ -0.33
APOBP04114 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC12.96□□□□□ -0.33
APOBP04114 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
APOBP04114 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
APOBP04114 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
APOBP04114 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
APOBP04114 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
APOBP04114 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
APOBP04114 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
APOBP04114 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
APOBP04114 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC12.96□□□□□ -0.33
APOBP04114 AF186192.3-201ENST00000583427 947 ntBASIC12.96□□□□□ -0.33
APOBP04114 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC12.96□□□□□ -0.33
APOBP04114 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
APOBP04114 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC12.96□□□□□ -0.33
APOBP04114 KRT18P56-201ENST00000507275 550 ntBASIC12.96□□□□□ -0.33
APOBP04114 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
APOBP04114 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC12.96□□□□□ -0.34
APOBP04114 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
APOBP04114 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.34
APOBP04114 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
APOBP04114 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
APOBP04114 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC12.96□□□□□ -0.34
APOBP04114 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms