Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC23.92■■□□□ 1.42
CTDNEP1O95476 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC23.92■■□□□ 1.42
CTDNEP1O95476 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
CTDNEP1O95476 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC23.92■■□□□ 1.42
CTDNEP1O95476 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC23.92■■□□□ 1.42
CTDNEP1O95476 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC23.92■■□□□ 1.42
CTDNEP1O95476 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC23.91■■□□□ 1.42
CTDNEP1O95476 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC23.91■■□□□ 1.42
CTDNEP1O95476 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
CTDNEP1O95476 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CTDNEP1O95476 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC23.91■■□□□ 1.42
CTDNEP1O95476 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC23.91■■□□□ 1.42
CTDNEP1O95476 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC23.91■■□□□ 1.42
CTDNEP1O95476 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CTDNEP1O95476 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
CTDNEP1O95476 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC23.91■■□□□ 1.42
CTDNEP1O95476 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CTDNEP1O95476 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC23.91■■□□□ 1.42
CTDNEP1O95476 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC23.9■■□□□ 1.42
CTDNEP1O95476 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
CTDNEP1O95476 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC23.9■■□□□ 1.42
CTDNEP1O95476 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
CTDNEP1O95476 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC23.9■■□□□ 1.42
CTDNEP1O95476 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
CTDNEP1O95476 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
CTDNEP1O95476 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC23.9■■□□□ 1.42
CTDNEP1O95476 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC23.9■■□□□ 1.42
CTDNEP1O95476 ME3-201ENST00000323418 1068 ntTSL 5 BASIC23.9■■□□□ 1.42
CTDNEP1O95476 HSCB-202ENST00000398941 955 ntTSL 2 BASIC23.9■■□□□ 1.42
CTDNEP1O95476 AL162430.1-201ENST00000480705 870 ntBASIC23.9■■□□□ 1.42
CTDNEP1O95476 SPI1-203ENST00000533030 661 ntTSL 2 BASIC23.9■■□□□ 1.42
CTDNEP1O95476 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC23.9■■□□□ 1.42
CTDNEP1O95476 ANKRD20A6P-201ENST00000618763 204 ntBASIC23.9■■□□□ 1.42
CTDNEP1O95476 AC010536.3-201ENST00000620306 533 ntBASIC23.9■■□□□ 1.42
CTDNEP1O95476 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
CTDNEP1O95476 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
CTDNEP1O95476 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC23.9■■□□□ 1.42
CTDNEP1O95476 MED17-221ENST00000639724 2317 ntTSL 5 BASIC23.9■■□□□ 1.42
CTDNEP1O95476 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
CTDNEP1O95476 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC23.9■■□□□ 1.42
CTDNEP1O95476 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
CTDNEP1O95476 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC23.9■■□□□ 1.42
CTDNEP1O95476 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC23.9■■□□□ 1.42
CTDNEP1O95476 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC23.89■■□□□ 1.42
CTDNEP1O95476 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC23.89■■□□□ 1.42
CTDNEP1O95476 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC23.89■■□□□ 1.42
CTDNEP1O95476 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC23.89■■□□□ 1.41
CTDNEP1O95476 WWOX-218ENST00000627394 894 ntTSL 5 BASIC23.89■■□□□ 1.41
CTDNEP1O95476 MIR2861-201ENST00000636310 90 ntBASIC23.89■■□□□ 1.41
CTDNEP1O95476 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC23.89■■□□□ 1.41
CTDNEP1O95476 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC23.89■■□□□ 1.41
CTDNEP1O95476 AL512408.1-201ENST00000569378 2000 ntBASIC23.89■■□□□ 1.41
CTDNEP1O95476 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC23.89■■□□□ 1.41
CTDNEP1O95476 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC23.89■■□□□ 1.41
CTDNEP1O95476 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC23.89■■□□□ 1.41
CTDNEP1O95476 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC23.88■■□□□ 1.41
CTDNEP1O95476 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC23.88■■□□□ 1.41
CTDNEP1O95476 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CTDNEP1O95476 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
CTDNEP1O95476 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
CTDNEP1O95476 AL162377.1-201ENST00000618844 1793 ntBASIC23.88■■□□□ 1.41
CTDNEP1O95476 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CTDNEP1O95476 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CTDNEP1O95476 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC23.88■■□□□ 1.41
CTDNEP1O95476 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CTDNEP1O95476 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CTDNEP1O95476 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC23.88■■□□□ 1.41
CTDNEP1O95476 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
CTDNEP1O95476 TERF1P5-201ENST00000477545 1207 ntBASIC23.88■■□□□ 1.41
CTDNEP1O95476 MFSD11-216ENST00000590393 1141 ntBASIC23.88■■□□□ 1.41
CTDNEP1O95476 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CTDNEP1O95476 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC23.88■■□□□ 1.41
CTDNEP1O95476 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CTDNEP1O95476 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CTDNEP1O95476 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC23.88■■□□□ 1.41
CTDNEP1O95476 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CTDNEP1O95476 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
CTDNEP1O95476 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CTDNEP1O95476 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC23.87■■□□□ 1.41
CTDNEP1O95476 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC23.87■■□□□ 1.41
CTDNEP1O95476 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC23.87■■□□□ 1.41
CTDNEP1O95476 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC23.87■■□□□ 1.41
CTDNEP1O95476 AC006015.1-201ENST00000429970 570 ntBASIC23.87■■□□□ 1.41
CTDNEP1O95476 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CTDNEP1O95476 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC23.87■■□□□ 1.41
CTDNEP1O95476 AC137761.2-201ENST00000561729 223 ntBASIC23.87■■□□□ 1.41
CTDNEP1O95476 AC145350.3-201ENST00000569033 163 ntBASIC23.87■■□□□ 1.41
CTDNEP1O95476 PLLP-204ENST00000569059 665 ntTSL 3 BASIC23.87■■□□□ 1.41
CTDNEP1O95476 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC23.87■■□□□ 1.41
CTDNEP1O95476 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC23.87■■□□□ 1.41
CTDNEP1O95476 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC23.87■■□□□ 1.41
CTDNEP1O95476 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CTDNEP1O95476 SLC25A24-204ENST00000569674 2357 ntBASIC23.86■■□□□ 1.41
CTDNEP1O95476 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CTDNEP1O95476 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
CTDNEP1O95476 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
CTDNEP1O95476 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC23.86■■□□□ 1.41
CTDNEP1O95476 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC23.86■■□□□ 1.41
CTDNEP1O95476 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
CTDNEP1O95476 AC011767.1-201ENST00000617410 1153 ntBASIC23.86■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms