Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC20.13■□□□□ 0.81
VPS4BO75351 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
VPS4BO75351 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
VPS4BO75351 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.13■□□□□ 0.81
VPS4BO75351 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
VPS4BO75351 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VPS4BO75351 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VPS4BO75351 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
VPS4BO75351 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VPS4BO75351 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VPS4BO75351 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
VPS4BO75351 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC20.12■□□□□ 0.81
VPS4BO75351 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
VPS4BO75351 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC20.12■□□□□ 0.81
VPS4BO75351 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VPS4BO75351 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
VPS4BO75351 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
VPS4BO75351 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
VPS4BO75351 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC20.12■□□□□ 0.81
VPS4BO75351 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC20.12■□□□□ 0.81
VPS4BO75351 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC20.12■□□□□ 0.81
VPS4BO75351 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC20.12■□□□□ 0.81
VPS4BO75351 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
VPS4BO75351 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
VPS4BO75351 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC20.12■□□□□ 0.81
VPS4BO75351 PXK-203ENST00000383715 1756 ntTSL 5 BASIC20.12■□□□□ 0.81
VPS4BO75351 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.12■□□□□ 0.81
VPS4BO75351 AC092667.1-201ENST00000434301 2586 ntBASIC20.12■□□□□ 0.81
VPS4BO75351 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VPS4BO75351 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VPS4BO75351 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC20.11■□□□□ 0.81
VPS4BO75351 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
VPS4BO75351 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC20.11■□□□□ 0.81
VPS4BO75351 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC20.11■□□□□ 0.81
VPS4BO75351 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC20.11■□□□□ 0.81
VPS4BO75351 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
VPS4BO75351 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC20.11■□□□□ 0.81
VPS4BO75351 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.11■□□□□ 0.81
VPS4BO75351 DBI-210ENST00000542275 757 ntTSL 5 BASIC20.11■□□□□ 0.81
VPS4BO75351 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC20.11■□□□□ 0.81
VPS4BO75351 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC20.11■□□□□ 0.81
VPS4BO75351 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
VPS4BO75351 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
VPS4BO75351 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC20.11■□□□□ 0.81
VPS4BO75351 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
VPS4BO75351 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.11■□□□□ 0.81
VPS4BO75351 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC20.11■□□□□ 0.81
VPS4BO75351 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
VPS4BO75351 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC20.11■□□□□ 0.81
VPS4BO75351 AC007225.1-201ENST00000566331 1836 ntBASIC20.11■□□□□ 0.81
VPS4BO75351 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
VPS4BO75351 RARG-204ENST00000543726 1779 ntTSL 2 BASIC20.11■□□□□ 0.81
VPS4BO75351 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC20.11■□□□□ 0.81
VPS4BO75351 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
VPS4BO75351 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
VPS4BO75351 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
VPS4BO75351 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC20.1■□□□□ 0.81
VPS4BO75351 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
VPS4BO75351 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
VPS4BO75351 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
VPS4BO75351 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
VPS4BO75351 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
VPS4BO75351 HSCB-202ENST00000398941 955 ntTSL 2 BASIC20.1■□□□□ 0.81
VPS4BO75351 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC20.1■□□□□ 0.81
VPS4BO75351 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
VPS4BO75351 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
VPS4BO75351 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
VPS4BO75351 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC20.09■□□□□ 0.81
VPS4BO75351 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
VPS4BO75351 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.09■□□□□ 0.81
VPS4BO75351 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
VPS4BO75351 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
VPS4BO75351 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
VPS4BO75351 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
VPS4BO75351 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC20.09■□□□□ 0.81
VPS4BO75351 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC20.09■□□□□ 0.81
VPS4BO75351 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC20.09■□□□□ 0.81
VPS4BO75351 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC20.09■□□□□ 0.81
VPS4BO75351 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC20.09■□□□□ 0.81
VPS4BO75351 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
VPS4BO75351 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
VPS4BO75351 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
VPS4BO75351 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC20.09■□□□□ 0.81
VPS4BO75351 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
VPS4BO75351 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
VPS4BO75351 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
VPS4BO75351 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
VPS4BO75351 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
VPS4BO75351 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC20.08■□□□□ 0.81
VPS4BO75351 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
VPS4BO75351 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
VPS4BO75351 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
VPS4BO75351 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
VPS4BO75351 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
VPS4BO75351 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC20.08■□□□□ 0.81
VPS4BO75351 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
VPS4BO75351 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
VPS4BO75351 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
VPS4BO75351 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
VPS4BO75351 AC005224.4-201ENST00000583262 1652 ntBASIC20.08■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms