Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC007225.1-201ENST00000566331 1836 ntBASIC17.93■□□□□ 0.46
NKX3-1Q99801 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC17.93■□□□□ 0.46
NKX3-1Q99801 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
NKX3-1Q99801 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
NKX3-1Q99801 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC17.93■□□□□ 0.46
NKX3-1Q99801 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
NKX3-1Q99801 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
NKX3-1Q99801 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
NKX3-1Q99801 AC007952.6-201ENST00000573168 2673 ntBASIC17.93■□□□□ 0.46
NKX3-1Q99801 AC003957.1-201ENST00000625108 2673 ntBASIC17.93■□□□□ 0.46
NKX3-1Q99801 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
NKX3-1Q99801 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC17.93■□□□□ 0.46
NKX3-1Q99801 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
NKX3-1Q99801 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC17.93■□□□□ 0.46
NKX3-1Q99801 AL355001.2-201ENST00000620617 1191 ntBASIC17.93■□□□□ 0.46
NKX3-1Q99801 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
NKX3-1Q99801 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC17.93■□□□□ 0.46
NKX3-1Q99801 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
NKX3-1Q99801 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
NKX3-1Q99801 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
NKX3-1Q99801 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC17.93■□□□□ 0.46
NKX3-1Q99801 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
NKX3-1Q99801 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC17.92■□□□□ 0.46
NKX3-1Q99801 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
NKX3-1Q99801 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC17.92■□□□□ 0.46
NKX3-1Q99801 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
NKX3-1Q99801 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC17.92■□□□□ 0.46
NKX3-1Q99801 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC17.92■□□□□ 0.46
NKX3-1Q99801 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
NKX3-1Q99801 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
NKX3-1Q99801 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
NKX3-1Q99801 EDA-201ENST00000338901 1233 ntBASIC17.92■□□□□ 0.46
NKX3-1Q99801 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
NKX3-1Q99801 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
NKX3-1Q99801 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC17.92■□□□□ 0.46
NKX3-1Q99801 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC17.92■□□□□ 0.46
NKX3-1Q99801 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
NKX3-1Q99801 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC17.92■□□□□ 0.46
NKX3-1Q99801 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC17.92■□□□□ 0.46
NKX3-1Q99801 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC17.92■□□□□ 0.46
NKX3-1Q99801 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC17.92■□□□□ 0.46
NKX3-1Q99801 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
NKX3-1Q99801 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
NKX3-1Q99801 AL512408.1-201ENST00000569378 2000 ntBASIC17.92■□□□□ 0.46
NKX3-1Q99801 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
NKX3-1Q99801 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
NKX3-1Q99801 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC17.92■□□□□ 0.46
NKX3-1Q99801 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
NKX3-1Q99801 TSPY26P-201ENST00000476365 1326 ntBASIC17.92■□□□□ 0.46
NKX3-1Q99801 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
NKX3-1Q99801 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
NKX3-1Q99801 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
NKX3-1Q99801 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
NKX3-1Q99801 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC17.91■□□□□ 0.46
NKX3-1Q99801 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC17.91■□□□□ 0.46
NKX3-1Q99801 BID-203ENST00000399765 1879 ntTSL 2 BASIC17.91■□□□□ 0.46
NKX3-1Q99801 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
NKX3-1Q99801 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC17.91■□□□□ 0.46
NKX3-1Q99801 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC17.91■□□□□ 0.46
NKX3-1Q99801 DET1-207ENST00000564406 2315 ntTSL 2 BASIC17.91■□□□□ 0.46
NKX3-1Q99801 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
NKX3-1Q99801 AC099791.1-201ENST00000416440 715 ntBASIC17.91■□□□□ 0.46
NKX3-1Q99801 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC17.91■□□□□ 0.46
NKX3-1Q99801 AF213884.3-201ENST00000563833 479 ntBASIC17.91■□□□□ 0.46
NKX3-1Q99801 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC17.91■□□□□ 0.46
NKX3-1Q99801 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
NKX3-1Q99801 AC105233.4-201ENST00000642045 216 ntBASIC17.91■□□□□ 0.46
NKX3-1Q99801 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
NKX3-1Q99801 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
NKX3-1Q99801 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC17.91■□□□□ 0.46
NKX3-1Q99801 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
NKX3-1Q99801 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC17.91■□□□□ 0.46
NKX3-1Q99801 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC17.9■□□□□ 0.46
NKX3-1Q99801 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
NKX3-1Q99801 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
NKX3-1Q99801 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
NKX3-1Q99801 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
NKX3-1Q99801 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
NKX3-1Q99801 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
NKX3-1Q99801 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
NKX3-1Q99801 HYI-206ENST00000372434 1025 ntTSL 5 BASIC17.9■□□□□ 0.46
NKX3-1Q99801 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
NKX3-1Q99801 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
NKX3-1Q99801 GRAMD4P2-201ENST00000423297 1097 ntBASIC17.9■□□□□ 0.46
NKX3-1Q99801 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC17.9■□□□□ 0.46
NKX3-1Q99801 MAG-206ENST00000597035 542 ntTSL 4 BASIC17.9■□□□□ 0.46
NKX3-1Q99801 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
NKX3-1Q99801 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC17.9■□□□□ 0.46
NKX3-1Q99801 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
NKX3-1Q99801 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
NKX3-1Q99801 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
NKX3-1Q99801 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
NKX3-1Q99801 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
NKX3-1Q99801 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC17.9■□□□□ 0.46
NKX3-1Q99801 AC020907.5-201ENST00000624372 1936 ntBASIC17.9■□□□□ 0.46
NKX3-1Q99801 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
NKX3-1Q99801 AC005224.4-201ENST00000583262 1652 ntBASIC17.9■□□□□ 0.46
NKX3-1Q99801 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC17.9■□□□□ 0.46
NKX3-1Q99801 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC17.89■□□□□ 0.46
NKX3-1Q99801 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms