Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
CDX2Q99626 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CDX2Q99626 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
CDX2Q99626 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
CDX2Q99626 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC21.89■■□□□ 1.1
CDX2Q99626 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.1
CDX2Q99626 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CDX2Q99626 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CDX2Q99626 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC21.89■■□□□ 1.09
CDX2Q99626 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
CDX2Q99626 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
CDX2Q99626 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
CDX2Q99626 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC21.89■■□□□ 1.09
CDX2Q99626 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC21.88■■□□□ 1.09
CDX2Q99626 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CDX2Q99626 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
CDX2Q99626 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CDX2Q99626 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CDX2Q99626 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC21.88■■□□□ 1.09
CDX2Q99626 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
CDX2Q99626 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC21.88■■□□□ 1.09
CDX2Q99626 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC21.88■■□□□ 1.09
CDX2Q99626 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
CDX2Q99626 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
CDX2Q99626 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC21.88■■□□□ 1.09
CDX2Q99626 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
CDX2Q99626 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC21.88■■□□□ 1.09
CDX2Q99626 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC21.88■■□□□ 1.09
CDX2Q99626 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CDX2Q99626 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
CDX2Q99626 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
CDX2Q99626 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
CDX2Q99626 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CDX2Q99626 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CDX2Q99626 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC21.87■■□□□ 1.09
CDX2Q99626 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC21.87■■□□□ 1.09
CDX2Q99626 ISCU-203ENST00000431221 799 ntTSL 2 BASIC21.87■■□□□ 1.09
CDX2Q99626 KRT16P5-201ENST00000455284 522 ntBASIC21.87■■□□□ 1.09
CDX2Q99626 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC21.87■■□□□ 1.09
CDX2Q99626 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC21.87■■□□□ 1.09
CDX2Q99626 FITM1-202ENST00000559294 800 ntBASIC21.87■■□□□ 1.09
CDX2Q99626 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC21.87■■□□□ 1.09
CDX2Q99626 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CDX2Q99626 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC21.87■■□□□ 1.09
CDX2Q99626 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CDX2Q99626 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC21.86■■□□□ 1.09
CDX2Q99626 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC21.86■■□□□ 1.09
CDX2Q99626 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC21.86■■□□□ 1.09
CDX2Q99626 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CDX2Q99626 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
CDX2Q99626 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CDX2Q99626 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC21.86■■□□□ 1.09
CDX2Q99626 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC21.86■■□□□ 1.09
CDX2Q99626 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC21.86■■□□□ 1.09
CDX2Q99626 FDX2-207ENST00000494368 584 ntTSL 4 BASIC21.86■■□□□ 1.09
CDX2Q99626 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC21.86■■□□□ 1.09
CDX2Q99626 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC21.86■■□□□ 1.09
CDX2Q99626 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC21.86■■□□□ 1.09
CDX2Q99626 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CDX2Q99626 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
CDX2Q99626 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC21.86■■□□□ 1.09
CDX2Q99626 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC21.85■■□□□ 1.09
CDX2Q99626 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CDX2Q99626 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
CDX2Q99626 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
CDX2Q99626 DUSP5P1-201ENST00000441325 1139 ntBASIC21.85■■□□□ 1.09
CDX2Q99626 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC21.85■■□□□ 1.09
CDX2Q99626 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC21.85■■□□□ 1.09
CDX2Q99626 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CDX2Q99626 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC21.85■■□□□ 1.09
CDX2Q99626 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC21.85■■□□□ 1.09
CDX2Q99626 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CDX2Q99626 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CDX2Q99626 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CDX2Q99626 RER1-204ENST00000378518 522 ntTSL 3 BASIC21.84■■□□□ 1.09
CDX2Q99626 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CDX2Q99626 AL390719.1-204ENST00000412397 1219 ntBASIC21.84■■□□□ 1.09
CDX2Q99626 LIN28AP1-201ENST00000429574 405 ntBASIC21.84■■□□□ 1.09
CDX2Q99626 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC21.84■■□□□ 1.09
CDX2Q99626 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC21.84■■□□□ 1.09
CDX2Q99626 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC21.84■■□□□ 1.09
CDX2Q99626 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
CDX2Q99626 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CDX2Q99626 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
CDX2Q99626 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC21.84■■□□□ 1.09
CDX2Q99626 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
CDX2Q99626 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC21.83■■□□□ 1.09
CDX2Q99626 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC21.83■■□□□ 1.09
CDX2Q99626 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC21.83■■□□□ 1.09
CDX2Q99626 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
CDX2Q99626 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC21.83■■□□□ 1.09
CDX2Q99626 AL450487.1-201ENST00000426799 995 ntBASIC21.83■■□□□ 1.09
CDX2Q99626 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CDX2Q99626 PP7080-204ENST00000510714 601 ntTSL 3 BASIC21.83■■□□□ 1.09
CDX2Q99626 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC21.83■■□□□ 1.09
CDX2Q99626 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
CDX2Q99626 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC21.83■■□□□ 1.08
CDX2Q99626 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CDX2Q99626 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CDX2Q99626 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC21.82■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms