Protein–RNA interactions for Protein: Q8TER0

SNED1, Sushi, nidogen and EGF-like domain-containing protein 1, humanhuman

Predictions only

Length 1,413 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNED1Q8TER0 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC25.33■■□□□ 1.65
SNED1Q8TER0 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC25.33■■□□□ 1.65
SNED1Q8TER0 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC25.32■■□□□ 1.64
SNED1Q8TER0 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
SNED1Q8TER0 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
SNED1Q8TER0 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
SNED1Q8TER0 RCN1P1-201ENST00000400413 996 ntBASIC25.32■■□□□ 1.64
SNED1Q8TER0 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC25.32■■□□□ 1.64
SNED1Q8TER0 KRT18P21-201ENST00000515767 1272 ntBASIC25.32■■□□□ 1.64
SNED1Q8TER0 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC25.32■■□□□ 1.64
SNED1Q8TER0 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC25.32■■□□□ 1.64
SNED1Q8TER0 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC25.32■■□□□ 1.64
SNED1Q8TER0 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
SNED1Q8TER0 SNX21-213ENST00000614929 587 ntTSL 5 BASIC25.32■■□□□ 1.64
SNED1Q8TER0 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC25.32■■□□□ 1.64
SNED1Q8TER0 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC25.32■■□□□ 1.64
SNED1Q8TER0 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
SNED1Q8TER0 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
SNED1Q8TER0 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC25.31■■□□□ 1.64
SNED1Q8TER0 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
SNED1Q8TER0 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC25.31■■□□□ 1.64
SNED1Q8TER0 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
SNED1Q8TER0 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
SNED1Q8TER0 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC25.31■■□□□ 1.64
SNED1Q8TER0 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
SNED1Q8TER0 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
SNED1Q8TER0 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
SNED1Q8TER0 TK2-204ENST00000525974 1178 ntTSL 2 BASIC25.31■■□□□ 1.64
SNED1Q8TER0 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC25.31■■□□□ 1.64
SNED1Q8TER0 C2orf69P4-201ENST00000565394 541 ntBASIC25.31■■□□□ 1.64
SNED1Q8TER0 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC25.31■■□□□ 1.64
SNED1Q8TER0 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC25.31■■□□□ 1.64
SNED1Q8TER0 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC25.31■■□□□ 1.64
SNED1Q8TER0 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
SNED1Q8TER0 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC25.31■■□□□ 1.64
SNED1Q8TER0 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC25.31■■□□□ 1.64
SNED1Q8TER0 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC25.31■■□□□ 1.64
SNED1Q8TER0 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
SNED1Q8TER0 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
SNED1Q8TER0 AC080038.3-201ENST00000623346 1952 ntBASIC25.31■■□□□ 1.64
SNED1Q8TER0 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
SNED1Q8TER0 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
SNED1Q8TER0 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC25.3■■□□□ 1.64
SNED1Q8TER0 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC25.3■■□□□ 1.64
SNED1Q8TER0 SERP1-205ENST00000487153 657 ntTSL 4 BASIC25.3■■□□□ 1.64
SNED1Q8TER0 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC25.3■■□□□ 1.64
SNED1Q8TER0 AL355075.4-201ENST00000554988 638 ntBASIC25.3■■□□□ 1.64
SNED1Q8TER0 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
SNED1Q8TER0 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
SNED1Q8TER0 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
SNED1Q8TER0 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
SNED1Q8TER0 AC127496.7-201ENST00000625110 1798 ntBASIC25.3■■□□□ 1.64
SNED1Q8TER0 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC25.3■■□□□ 1.64
SNED1Q8TER0 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC25.29■■□□□ 1.64
SNED1Q8TER0 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC25.29■■□□□ 1.64
SNED1Q8TER0 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC25.29■■□□□ 1.64
SNED1Q8TER0 AL023875.1-201ENST00000640777 796 ntBASIC25.29■■□□□ 1.64
SNED1Q8TER0 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC25.29■■□□□ 1.64
SNED1Q8TER0 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC25.29■■□□□ 1.64
SNED1Q8TER0 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC25.29■■□□□ 1.64
SNED1Q8TER0 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC25.29■■□□□ 1.64
SNED1Q8TER0 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
SNED1Q8TER0 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
SNED1Q8TER0 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
SNED1Q8TER0 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
SNED1Q8TER0 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
SNED1Q8TER0 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC25.29■■□□□ 1.64
SNED1Q8TER0 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
SNED1Q8TER0 AC239809.2-201ENST00000415381 517 ntBASIC25.29■■□□□ 1.64
SNED1Q8TER0 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC25.29■■□□□ 1.64
SNED1Q8TER0 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC25.29■■□□□ 1.64
SNED1Q8TER0 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC25.29■■□□□ 1.64
SNED1Q8TER0 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC25.29■■□□□ 1.64
SNED1Q8TER0 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC25.28■■□□□ 1.64
SNED1Q8TER0 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC25.28■■□□□ 1.64
SNED1Q8TER0 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC25.28■■□□□ 1.64
SNED1Q8TER0 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC25.28■■□□□ 1.64
SNED1Q8TER0 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
SNED1Q8TER0 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC25.28■■□□□ 1.64
SNED1Q8TER0 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC25.28■■□□□ 1.64
SNED1Q8TER0 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC25.28■■□□□ 1.64
SNED1Q8TER0 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
SNED1Q8TER0 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
SNED1Q8TER0 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
SNED1Q8TER0 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
SNED1Q8TER0 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC25.28■■□□□ 1.64
SNED1Q8TER0 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC25.28■■□□□ 1.64
SNED1Q8TER0 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC25.28■■□□□ 1.64
SNED1Q8TER0 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
SNED1Q8TER0 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC25.28■■□□□ 1.64
SNED1Q8TER0 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC25.28■■□□□ 1.64
SNED1Q8TER0 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
SNED1Q8TER0 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
SNED1Q8TER0 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC25.27■■□□□ 1.64
SNED1Q8TER0 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC25.27■■□□□ 1.64
SNED1Q8TER0 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC25.27■■□□□ 1.64
SNED1Q8TER0 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
SNED1Q8TER0 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
SNED1Q8TER0 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC25.27■■□□□ 1.64
SNED1Q8TER0 GGT1-206ENST00000404223 952 ntTSL 2 BASIC25.27■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms