Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC17.03■□□□□ 0.32
PDLIM3Q53GG5 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC17.02■□□□□ 0.32
PDLIM3Q53GG5 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
PDLIM3Q53GG5 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
PDLIM3Q53GG5 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PDLIM3Q53GG5 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PDLIM3Q53GG5 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC17.02■□□□□ 0.32
PDLIM3Q53GG5 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PDLIM3Q53GG5 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC17.02■□□□□ 0.32
PDLIM3Q53GG5 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC17.02■□□□□ 0.32
PDLIM3Q53GG5 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.32
PDLIM3Q53GG5 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC17.02■□□□□ 0.32
PDLIM3Q53GG5 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
PDLIM3Q53GG5 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
PDLIM3Q53GG5 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
PDLIM3Q53GG5 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC17.02■□□□□ 0.32
PDLIM3Q53GG5 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PDLIM3Q53GG5 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
PDLIM3Q53GG5 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
PDLIM3Q53GG5 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
PDLIM3Q53GG5 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
PDLIM3Q53GG5 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC17.02■□□□□ 0.31
PDLIM3Q53GG5 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
PDLIM3Q53GG5 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC17.02■□□□□ 0.31
PDLIM3Q53GG5 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
PDLIM3Q53GG5 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC17.02■□□□□ 0.31
PDLIM3Q53GG5 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
PDLIM3Q53GG5 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
PDLIM3Q53GG5 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PDLIM3Q53GG5 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
PDLIM3Q53GG5 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PDLIM3Q53GG5 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PDLIM3Q53GG5 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PDLIM3Q53GG5 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
PDLIM3Q53GG5 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PDLIM3Q53GG5 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC17.01■□□□□ 0.31
PDLIM3Q53GG5 MIR572-201ENST00000384983 95 ntBASIC17.01■□□□□ 0.31
PDLIM3Q53GG5 GPX1P1-201ENST00000388829 606 ntBASIC17.01■□□□□ 0.31
PDLIM3Q53GG5 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PDLIM3Q53GG5 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
PDLIM3Q53GG5 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PDLIM3Q53GG5 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PDLIM3Q53GG5 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
PDLIM3Q53GG5 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
PDLIM3Q53GG5 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC17.01■□□□□ 0.31
PDLIM3Q53GG5 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PDLIM3Q53GG5 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PDLIM3Q53GG5 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC17.01■□□□□ 0.31
PDLIM3Q53GG5 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC17.01■□□□□ 0.31
PDLIM3Q53GG5 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PDLIM3Q53GG5 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC17■□□□□ 0.31
PDLIM3Q53GG5 AC003102.1-202ENST00000563394 1796 ntBASIC17■□□□□ 0.31
PDLIM3Q53GG5 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC17■□□□□ 0.31
PDLIM3Q53GG5 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PDLIM3Q53GG5 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
PDLIM3Q53GG5 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC17■□□□□ 0.31
PDLIM3Q53GG5 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC17■□□□□ 0.31
PDLIM3Q53GG5 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC17■□□□□ 0.31
PDLIM3Q53GG5 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PDLIM3Q53GG5 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC17■□□□□ 0.31
PDLIM3Q53GG5 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC17■□□□□ 0.31
PDLIM3Q53GG5 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
PDLIM3Q53GG5 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC17■□□□□ 0.31
PDLIM3Q53GG5 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
PDLIM3Q53GG5 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PDLIM3Q53GG5 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC17■□□□□ 0.31
PDLIM3Q53GG5 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
PDLIM3Q53GG5 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
PDLIM3Q53GG5 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PDLIM3Q53GG5 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
PDLIM3Q53GG5 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PDLIM3Q53GG5 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PDLIM3Q53GG5 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC16.99■□□□□ 0.31
PDLIM3Q53GG5 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PDLIM3Q53GG5 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC16.99■□□□□ 0.31
PDLIM3Q53GG5 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC16.99■□□□□ 0.31
PDLIM3Q53GG5 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PDLIM3Q53GG5 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PDLIM3Q53GG5 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC16.99■□□□□ 0.31
PDLIM3Q53GG5 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PDLIM3Q53GG5 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC16.99■□□□□ 0.31
PDLIM3Q53GG5 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC16.99■□□□□ 0.31
PDLIM3Q53GG5 BID-214ENST00000617586 542 ntTSL 5 BASIC16.99■□□□□ 0.31
PDLIM3Q53GG5 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PDLIM3Q53GG5 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
PDLIM3Q53GG5 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PDLIM3Q53GG5 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
PDLIM3Q53GG5 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC16.99■□□□□ 0.31
PDLIM3Q53GG5 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
PDLIM3Q53GG5 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
PDLIM3Q53GG5 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PDLIM3Q53GG5 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PDLIM3Q53GG5 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PDLIM3Q53GG5 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
PDLIM3Q53GG5 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PDLIM3Q53GG5 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PDLIM3Q53GG5 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PDLIM3Q53GG5 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PDLIM3Q53GG5 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC16.98■□□□□ 0.31
PDLIM3Q53GG5 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms