Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
CCDC144BQ3MJ40 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
CCDC144BQ3MJ40 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
CCDC144BQ3MJ40 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC23.92■■□□□ 1.42
CCDC144BQ3MJ40 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
CCDC144BQ3MJ40 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC23.92■■□□□ 1.42
CCDC144BQ3MJ40 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC23.92■■□□□ 1.42
CCDC144BQ3MJ40 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CCDC144BQ3MJ40 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CCDC144BQ3MJ40 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
CCDC144BQ3MJ40 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
CCDC144BQ3MJ40 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC23.91■■□□□ 1.42
CCDC144BQ3MJ40 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
CCDC144BQ3MJ40 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
CCDC144BQ3MJ40 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC23.91■■□□□ 1.42
CCDC144BQ3MJ40 AC008687.6-201ENST00000596318 630 ntBASIC23.91■■□□□ 1.42
CCDC144BQ3MJ40 AC092118.2-201ENST00000613495 667 ntBASIC23.91■■□□□ 1.42
CCDC144BQ3MJ40 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC23.91■■□□□ 1.42
CCDC144BQ3MJ40 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CCDC144BQ3MJ40 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC23.91■■□□□ 1.42
CCDC144BQ3MJ40 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC23.91■■□□□ 1.42
CCDC144BQ3MJ40 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC23.91■■□□□ 1.42
CCDC144BQ3MJ40 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
CCDC144BQ3MJ40 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
CCDC144BQ3MJ40 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC23.9■■□□□ 1.42
CCDC144BQ3MJ40 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
CCDC144BQ3MJ40 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC23.9■■□□□ 1.42
CCDC144BQ3MJ40 POU5F1P4-201ENST00000413175 1085 ntBASIC23.9■■□□□ 1.42
CCDC144BQ3MJ40 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC23.9■■□□□ 1.42
CCDC144BQ3MJ40 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC23.9■■□□□ 1.42
CCDC144BQ3MJ40 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC23.9■■□□□ 1.42
CCDC144BQ3MJ40 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC23.9■■□□□ 1.42
CCDC144BQ3MJ40 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC23.9■■□□□ 1.42
CCDC144BQ3MJ40 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
CCDC144BQ3MJ40 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
CCDC144BQ3MJ40 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
CCDC144BQ3MJ40 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
CCDC144BQ3MJ40 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
CCDC144BQ3MJ40 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC23.89■■□□□ 1.42
CCDC144BQ3MJ40 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC23.89■■□□□ 1.42
CCDC144BQ3MJ40 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.42
CCDC144BQ3MJ40 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
CCDC144BQ3MJ40 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC23.89■■□□□ 1.42
CCDC144BQ3MJ40 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
CCDC144BQ3MJ40 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
CCDC144BQ3MJ40 AC092667.1-201ENST00000434301 2586 ntBASIC23.89■■□□□ 1.42
CCDC144BQ3MJ40 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC23.89■■□□□ 1.41
CCDC144BQ3MJ40 BX276092.2-201ENST00000417668 665 ntBASIC23.89■■□□□ 1.41
CCDC144BQ3MJ40 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC23.89■■□□□ 1.41
CCDC144BQ3MJ40 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC23.89■■□□□ 1.41
CCDC144BQ3MJ40 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC23.89■■□□□ 1.41
CCDC144BQ3MJ40 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC23.89■■□□□ 1.41
CCDC144BQ3MJ40 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC23.89■■□□□ 1.41
CCDC144BQ3MJ40 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC23.89■■□□□ 1.41
CCDC144BQ3MJ40 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC23.89■■□□□ 1.41
CCDC144BQ3MJ40 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
CCDC144BQ3MJ40 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
CCDC144BQ3MJ40 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC23.88■■□□□ 1.41
CCDC144BQ3MJ40 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CCDC144BQ3MJ40 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC23.88■■□□□ 1.41
CCDC144BQ3MJ40 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CCDC144BQ3MJ40 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CCDC144BQ3MJ40 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CCDC144BQ3MJ40 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC23.88■■□□□ 1.41
CCDC144BQ3MJ40 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC23.88■■□□□ 1.41
CCDC144BQ3MJ40 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC23.88■■□□□ 1.41
CCDC144BQ3MJ40 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
CCDC144BQ3MJ40 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC23.88■■□□□ 1.41
CCDC144BQ3MJ40 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC23.88■■□□□ 1.41
CCDC144BQ3MJ40 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
CCDC144BQ3MJ40 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC23.88■■□□□ 1.41
CCDC144BQ3MJ40 ITM2C-210ENST00000620962 501 ntBASIC23.88■■□□□ 1.41
CCDC144BQ3MJ40 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC23.88■■□□□ 1.41
CCDC144BQ3MJ40 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CCDC144BQ3MJ40 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC23.88■■□□□ 1.41
CCDC144BQ3MJ40 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC23.88■■□□□ 1.41
CCDC144BQ3MJ40 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC23.88■■□□□ 1.41
CCDC144BQ3MJ40 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
CCDC144BQ3MJ40 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
CCDC144BQ3MJ40 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CCDC144BQ3MJ40 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CCDC144BQ3MJ40 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
CCDC144BQ3MJ40 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
CCDC144BQ3MJ40 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC23.87■■□□□ 1.41
CCDC144BQ3MJ40 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CCDC144BQ3MJ40 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC23.87■■□□□ 1.41
CCDC144BQ3MJ40 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC23.87■■□□□ 1.41
CCDC144BQ3MJ40 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC23.87■■□□□ 1.41
CCDC144BQ3MJ40 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC23.87■■□□□ 1.41
CCDC144BQ3MJ40 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC23.87■■□□□ 1.41
CCDC144BQ3MJ40 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC23.87■■□□□ 1.41
CCDC144BQ3MJ40 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
CCDC144BQ3MJ40 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC23.87■■□□□ 1.41
CCDC144BQ3MJ40 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC23.86■■□□□ 1.41
CCDC144BQ3MJ40 TUB-203ENST00000534099 1759 ntTSL 2 BASIC23.86■■□□□ 1.41
CCDC144BQ3MJ40 AL121603.2-201ENST00000557373 2117 ntBASIC23.86■■□□□ 1.41
CCDC144BQ3MJ40 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC23.86■■□□□ 1.41
CCDC144BQ3MJ40 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
CCDC144BQ3MJ40 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC23.86■■□□□ 1.41
CCDC144BQ3MJ40 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC23.86■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms