Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
HSPG2P98160 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
HSPG2P98160 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
HSPG2P98160 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
HSPG2P98160 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC12.97□□□□□ -0.33
HSPG2P98160 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
HSPG2P98160 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HSPG2P98160 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC12.97□□□□□ -0.33
HSPG2P98160 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC12.97□□□□□ -0.33
HSPG2P98160 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC12.97□□□□□ -0.33
HSPG2P98160 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC12.97□□□□□ -0.33
HSPG2P98160 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC12.97□□□□□ -0.33
HSPG2P98160 MYC-208ENST00000641036 567 ntBASIC12.97□□□□□ -0.33
HSPG2P98160 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC12.97□□□□□ -0.33
HSPG2P98160 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
HSPG2P98160 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
HSPG2P98160 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC12.96□□□□□ -0.33
HSPG2P98160 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC12.96□□□□□ -0.33
HSPG2P98160 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC12.96□□□□□ -0.33
HSPG2P98160 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
HSPG2P98160 MCRIP2P1-201ENST00000394346 511 ntBASIC12.96□□□□□ -0.33
HSPG2P98160 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
HSPG2P98160 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
HSPG2P98160 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
HSPG2P98160 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
HSPG2P98160 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
HSPG2P98160 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC12.96□□□□□ -0.33
HSPG2P98160 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC12.96□□□□□ -0.33
HSPG2P98160 HTR7P1-201ENST00000538670 1336 ntBASIC12.96□□□□□ -0.33
HSPG2P98160 AL390955.1-201ENST00000428694 934 ntBASIC12.96□□□□□ -0.34
HSPG2P98160 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC12.96□□□□□ -0.34
HSPG2P98160 AC110285.5-201ENST00000611501 352 ntBASIC12.96□□□□□ -0.34
HSPG2P98160 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.34
HSPG2P98160 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC12.96□□□□□ -0.34
HSPG2P98160 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
HSPG2P98160 FITM1-202ENST00000559294 800 ntBASIC12.95□□□□□ -0.34
HSPG2P98160 RPS15-203ENST00000586096 570 ntTSL 2 BASIC12.95□□□□□ -0.34
HSPG2P98160 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC12.95□□□□□ -0.34
HSPG2P98160 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
HSPG2P98160 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HSPG2P98160 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
HSPG2P98160 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HSPG2P98160 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
HSPG2P98160 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC12.95□□□□□ -0.34
HSPG2P98160 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC12.95□□□□□ -0.34
HSPG2P98160 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
HSPG2P98160 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
HSPG2P98160 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HSPG2P98160 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
HSPG2P98160 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HSPG2P98160 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HSPG2P98160 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
HSPG2P98160 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
HSPG2P98160 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC12.94□□□□□ -0.34
HSPG2P98160 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
HSPG2P98160 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC12.94□□□□□ -0.34
HSPG2P98160 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC12.94□□□□□ -0.34
HSPG2P98160 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
HSPG2P98160 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HSPG2P98160 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
HSPG2P98160 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC12.94□□□□□ -0.34
HSPG2P98160 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HSPG2P98160 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HSPG2P98160 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
HSPG2P98160 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HSPG2P98160 UNC93B2-201ENST00000285383 730 ntBASIC12.94□□□□□ -0.34
HSPG2P98160 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC12.94□□□□□ -0.34
HSPG2P98160 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HSPG2P98160 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
HSPG2P98160 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HSPG2P98160 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
HSPG2P98160 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC12.94□□□□□ -0.34
HSPG2P98160 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
HSPG2P98160 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC12.94□□□□□ -0.34
HSPG2P98160 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC12.94□□□□□ -0.34
HSPG2P98160 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HSPG2P98160 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HSPG2P98160 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HSPG2P98160 AC137767.1-201ENST00000602918 1920 ntBASIC12.93□□□□□ -0.34
HSPG2P98160 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
HSPG2P98160 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HSPG2P98160 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HSPG2P98160 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HSPG2P98160 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HSPG2P98160 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC12.93□□□□□ -0.34
HSPG2P98160 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC12.93□□□□□ -0.34
HSPG2P98160 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
HSPG2P98160 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
HSPG2P98160 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
HSPG2P98160 AL355355.2-201ENST00000442321 338 ntBASIC12.93□□□□□ -0.34
HSPG2P98160 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC12.93□□□□□ -0.34
HSPG2P98160 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HSPG2P98160 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC12.93□□□□□ -0.34
HSPG2P98160 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
HSPG2P98160 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC12.92□□□□□ -0.34
HSPG2P98160 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC12.92□□□□□ -0.34
HSPG2P98160 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HSPG2P98160 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
HSPG2P98160 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
HSPG2P98160 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC12.92□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms