Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
LIM2P55344 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
LIM2P55344 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
LIM2P55344 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC19.58■□□□□ 0.73
LIM2P55344 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
LIM2P55344 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC19.58■□□□□ 0.72
LIM2P55344 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC19.58■□□□□ 0.72
LIM2P55344 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC19.58■□□□□ 0.72
LIM2P55344 AC080038.1-201ENST00000611274 1154 ntBASIC19.58■□□□□ 0.72
LIM2P55344 AC013268.1-206ENST00000638368 961 ntBASIC19.58■□□□□ 0.72
LIM2P55344 AC112229.1-201ENST00000639295 961 ntBASIC19.58■□□□□ 0.72
LIM2P55344 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC19.58■□□□□ 0.72
LIM2P55344 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
LIM2P55344 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
LIM2P55344 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
LIM2P55344 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LIM2P55344 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
LIM2P55344 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
LIM2P55344 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC19.57■□□□□ 0.72
LIM2P55344 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
LIM2P55344 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC19.57■□□□□ 0.72
LIM2P55344 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC19.57■□□□□ 0.72
LIM2P55344 PTPA-214ENST00000423100 988 ntTSL 2 BASIC19.57■□□□□ 0.72
LIM2P55344 CNN2P6-201ENST00000439038 900 ntBASIC19.57■□□□□ 0.72
LIM2P55344 DLX3-202ENST00000512495 834 ntTSL 2 BASIC19.57■□□□□ 0.72
LIM2P55344 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC19.57■□□□□ 0.72
LIM2P55344 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
LIM2P55344 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC19.57■□□□□ 0.72
LIM2P55344 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC19.57■□□□□ 0.72
LIM2P55344 METTL26-203ENST00000397664 604 ntTSL 2 BASIC19.56■□□□□ 0.72
LIM2P55344 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
LIM2P55344 AC007322.4-201ENST00000509611 723 ntBASIC19.56■□□□□ 0.72
LIM2P55344 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC19.56■□□□□ 0.72
LIM2P55344 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC19.56■□□□□ 0.72
LIM2P55344 VPS53-216ENST00000574029 585 ntTSL 4 BASIC19.56■□□□□ 0.72
LIM2P55344 MDK-213ENST00000617138 635 ntTSL 2 BASIC19.56■□□□□ 0.72
LIM2P55344 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC19.56■□□□□ 0.72
LIM2P55344 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC19.56■□□□□ 0.72
LIM2P55344 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC19.56■□□□□ 0.72
LIM2P55344 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
LIM2P55344 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
LIM2P55344 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
LIM2P55344 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
LIM2P55344 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIM2P55344 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIM2P55344 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIM2P55344 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIM2P55344 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
LIM2P55344 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC19.55■□□□□ 0.72
LIM2P55344 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
LIM2P55344 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC19.55■□□□□ 0.72
LIM2P55344 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC19.55■□□□□ 0.72
LIM2P55344 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
LIM2P55344 AC121338.2-201ENST00000622535 1744 ntBASIC19.55■□□□□ 0.72
LIM2P55344 AC231657.2-201ENST00000624556 255 ntBASIC19.55■□□□□ 0.72
LIM2P55344 AC073111.5-205ENST00000641717 521 ntBASIC19.55■□□□□ 0.72
LIM2P55344 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIM2P55344 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIM2P55344 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIM2P55344 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIM2P55344 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC19.55■□□□□ 0.72
LIM2P55344 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIM2P55344 PKD1P6-201ENST00000343738 4769 ntBASIC19.55■□□□□ 0.72
LIM2P55344 AC116050.2-201ENST00000612102 1779 ntBASIC19.55■□□□□ 0.72
LIM2P55344 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
LIM2P55344 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
LIM2P55344 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
LIM2P55344 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
LIM2P55344 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIM2P55344 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC19.54■□□□□ 0.72
LIM2P55344 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
LIM2P55344 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIM2P55344 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
LIM2P55344 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC19.54■□□□□ 0.72
LIM2P55344 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC19.54■□□□□ 0.72
LIM2P55344 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
LIM2P55344 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
LIM2P55344 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIM2P55344 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.54■□□□□ 0.72
LIM2P55344 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC19.54■□□□□ 0.72
LIM2P55344 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIM2P55344 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.54■□□□□ 0.72
LIM2P55344 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
LIM2P55344 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
LIM2P55344 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIM2P55344 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
LIM2P55344 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LIM2P55344 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
LIM2P55344 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LIM2P55344 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
LIM2P55344 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LIM2P55344 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
LIM2P55344 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
LIM2P55344 CDCA4P2-201ENST00000441182 718 ntBASIC19.53■□□□□ 0.72
LIM2P55344 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC19.53■□□□□ 0.72
LIM2P55344 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC19.53■□□□□ 0.72
LIM2P55344 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC19.53■□□□□ 0.72
LIM2P55344 PLLP-204ENST00000569059 665 ntTSL 3 BASIC19.53■□□□□ 0.72
LIM2P55344 AL591742.1-201ENST00000604433 565 ntBASIC19.53■□□□□ 0.72
LIM2P55344 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms