Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
PCNAP12004 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
PCNAP12004 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PCNAP12004 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PCNAP12004 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PCNAP12004 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PCNAP12004 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
PCNAP12004 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC20.02■□□□□ 0.8
PCNAP12004 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC20.02■□□□□ 0.8
PCNAP12004 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PCNAP12004 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PCNAP12004 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PCNAP12004 LINC01006-201ENST00000333319 2292 ntBASIC20.02■□□□□ 0.8
PCNAP12004 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
PCNAP12004 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PCNAP12004 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC20.02■□□□□ 0.79
PCNAP12004 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
PCNAP12004 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.02■□□□□ 0.79
PCNAP12004 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PCNAP12004 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
PCNAP12004 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
PCNAP12004 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PCNAP12004 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PCNAP12004 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
PCNAP12004 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
PCNAP12004 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
PCNAP12004 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PCNAP12004 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
PCNAP12004 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
PCNAP12004 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PCNAP12004 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PCNAP12004 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20■□□□□ 0.79
PCNAP12004 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
PCNAP12004 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC20■□□□□ 0.79
PCNAP12004 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PCNAP12004 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
PCNAP12004 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC20■□□□□ 0.79
PCNAP12004 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC20■□□□□ 0.79
PCNAP12004 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC20■□□□□ 0.79
PCNAP12004 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC20■□□□□ 0.79
PCNAP12004 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC20■□□□□ 0.79
PCNAP12004 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC20■□□□□ 0.79
PCNAP12004 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20■□□□□ 0.79
PCNAP12004 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20■□□□□ 0.79
PCNAP12004 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
PCNAP12004 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC20■□□□□ 0.79
PCNAP12004 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PCNAP12004 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC19.99■□□□□ 0.79
PCNAP12004 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
PCNAP12004 AC121338.2-201ENST00000622535 1744 ntBASIC19.99■□□□□ 0.79
PCNAP12004 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
PCNAP12004 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
PCNAP12004 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
PCNAP12004 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PCNAP12004 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
PCNAP12004 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
PCNAP12004 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
PCNAP12004 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC19.99■□□□□ 0.79
PCNAP12004 SLC7A5P2-201ENST00000553010 536 ntBASIC19.99■□□□□ 0.79
PCNAP12004 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC19.99■□□□□ 0.79
PCNAP12004 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
PCNAP12004 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC19.99■□□□□ 0.79
PCNAP12004 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
PCNAP12004 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PCNAP12004 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
PCNAP12004 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PCNAP12004 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PCNAP12004 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
PCNAP12004 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
PCNAP12004 GALNS-213ENST00000569433 723 ntTSL 3 BASIC19.98■□□□□ 0.79
PCNAP12004 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC19.98■□□□□ 0.79
PCNAP12004 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC19.98■□□□□ 0.79
PCNAP12004 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC19.98■□□□□ 0.79
PCNAP12004 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
PCNAP12004 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PCNAP12004 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PCNAP12004 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC19.98■□□□□ 0.79
PCNAP12004 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC19.98■□□□□ 0.79
PCNAP12004 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PCNAP12004 AC019069.1-201ENST00000610008 1333 ntBASIC19.98■□□□□ 0.79
PCNAP12004 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PCNAP12004 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PCNAP12004 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PCNAP12004 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
PCNAP12004 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PCNAP12004 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
PCNAP12004 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PCNAP12004 KRT16P2-201ENST00000414673 1423 ntBASIC19.97■□□□□ 0.79
PCNAP12004 HACD1-201ENST00000326961 773 ntTSL 2 BASIC19.97■□□□□ 0.79
PCNAP12004 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
PCNAP12004 AC097381.1-201ENST00000429019 1296 ntBASIC19.97■□□□□ 0.79
PCNAP12004 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC19.97■□□□□ 0.79
PCNAP12004 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
PCNAP12004 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.97■□□□□ 0.79
PCNAP12004 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
PCNAP12004 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
PCNAP12004 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PCNAP12004 PLK5-205ENST00000642079 1969 ntBASIC19.97■□□□□ 0.79
PCNAP12004 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PCNAP12004 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms