Protein–RNA interactions for Protein: O43734

TRAF3IP2, Adapter protein CIKS, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3IP2O43734 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAF3IP2O43734 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
TRAF3IP2O43734 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAF3IP2O43734 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAF3IP2O43734 AC116050.2-201ENST00000612102 1779 ntBASIC18.38■□□□□ 0.53
TRAF3IP2O43734 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TRAF3IP2O43734 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
TRAF3IP2O43734 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAF3IP2O43734 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC18.38■□□□□ 0.53
TRAF3IP2O43734 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAF3IP2O43734 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
TRAF3IP2O43734 TERF1P5-201ENST00000477545 1207 ntBASIC18.38■□□□□ 0.53
TRAF3IP2O43734 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC18.38■□□□□ 0.53
TRAF3IP2O43734 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC18.38■□□□□ 0.53
TRAF3IP2O43734 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC18.38■□□□□ 0.53
TRAF3IP2O43734 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC18.38■□□□□ 0.53
TRAF3IP2O43734 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC18.38■□□□□ 0.53
TRAF3IP2O43734 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAF3IP2O43734 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
TRAF3IP2O43734 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAF3IP2O43734 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC18.38■□□□□ 0.53
TRAF3IP2O43734 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC18.38■□□□□ 0.53
TRAF3IP2O43734 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
TRAF3IP2O43734 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAF3IP2O43734 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAF3IP2O43734 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC18.38■□□□□ 0.53
TRAF3IP2O43734 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC18.37■□□□□ 0.53
TRAF3IP2O43734 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
TRAF3IP2O43734 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRAF3IP2O43734 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRAF3IP2O43734 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
TRAF3IP2O43734 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRAF3IP2O43734 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC18.37■□□□□ 0.53
TRAF3IP2O43734 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
TRAF3IP2O43734 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
TRAF3IP2O43734 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRAF3IP2O43734 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRAF3IP2O43734 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRAF3IP2O43734 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRAF3IP2O43734 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC18.37■□□□□ 0.53
TRAF3IP2O43734 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC18.37■□□□□ 0.53
TRAF3IP2O43734 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRAF3IP2O43734 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC18.37■□□□□ 0.53
TRAF3IP2O43734 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRAF3IP2O43734 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRAF3IP2O43734 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRAF3IP2O43734 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TRAF3IP2O43734 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRAF3IP2O43734 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRAF3IP2O43734 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TRAF3IP2O43734 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TRAF3IP2O43734 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC18.36■□□□□ 0.53
TRAF3IP2O43734 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TRAF3IP2O43734 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC18.36■□□□□ 0.53
TRAF3IP2O43734 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC18.36■□□□□ 0.53
TRAF3IP2O43734 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC18.36■□□□□ 0.53
TRAF3IP2O43734 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC18.36■□□□□ 0.53
TRAF3IP2O43734 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRAF3IP2O43734 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
TRAF3IP2O43734 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAF3IP2O43734 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAF3IP2O43734 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAF3IP2O43734 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC18.35■□□□□ 0.53
TRAF3IP2O43734 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAF3IP2O43734 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC18.35■□□□□ 0.53
TRAF3IP2O43734 STAC-204ENST00000457375 1366 ntTSL 2 BASIC18.35■□□□□ 0.53
TRAF3IP2O43734 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC18.35■□□□□ 0.53
TRAF3IP2O43734 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAF3IP2O43734 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAF3IP2O43734 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC18.35■□□□□ 0.53
TRAF3IP2O43734 PARL-206ENST00000435888 1098 ntTSL 5 BASIC18.35■□□□□ 0.53
TRAF3IP2O43734 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TRAF3IP2O43734 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC18.35■□□□□ 0.53
TRAF3IP2O43734 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC18.35■□□□□ 0.53
TRAF3IP2O43734 AC092437.1-201ENST00000624794 1048 ntBASIC18.35■□□□□ 0.53
TRAF3IP2O43734 AC013268.1-206ENST00000638368 961 ntBASIC18.35■□□□□ 0.53
TRAF3IP2O43734 AC112229.1-201ENST00000639295 961 ntBASIC18.35■□□□□ 0.53
TRAF3IP2O43734 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TRAF3IP2O43734 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
TRAF3IP2O43734 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
TRAF3IP2O43734 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAF3IP2O43734 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAF3IP2O43734 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAF3IP2O43734 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAF3IP2O43734 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAF3IP2O43734 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC18.34■□□□□ 0.53
TRAF3IP2O43734 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC18.34■□□□□ 0.53
TRAF3IP2O43734 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
TRAF3IP2O43734 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAF3IP2O43734 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TRAF3IP2O43734 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAF3IP2O43734 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC18.34■□□□□ 0.53
TRAF3IP2O43734 AC007322.3-201ENST00000426526 701 ntBASIC18.34■□□□□ 0.53
TRAF3IP2O43734 AC007322.4-201ENST00000509611 723 ntBASIC18.34■□□□□ 0.53
TRAF3IP2O43734 DUX4L16-201ENST00000555130 1264 ntBASIC18.34■□□□□ 0.53
TRAF3IP2O43734 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TRAF3IP2O43734 AC011767.1-201ENST00000617410 1153 ntBASIC18.34■□□□□ 0.53
TRAF3IP2O43734 BID-214ENST00000617586 542 ntTSL 5 BASIC18.34■□□□□ 0.53
TRAF3IP2O43734 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC18.34■□□□□ 0.53
TRAF3IP2O43734 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms