Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL6A6A6NMZ7 DECR2-212ENST00000627716 352 ntTSL 2 BASIC18.76■□□□□ 0.59
COL6A6A6NMZ7 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC18.76■□□□□ 0.59
COL6A6A6NMZ7 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC18.76■□□□□ 0.59
COL6A6A6NMZ7 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL6A6A6NMZ7 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL6A6A6NMZ7 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL6A6A6NMZ7 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
COL6A6A6NMZ7 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL6A6A6NMZ7 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC18.75■□□□□ 0.59
COL6A6A6NMZ7 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC18.75■□□□□ 0.59
COL6A6A6NMZ7 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC18.75■□□□□ 0.59
COL6A6A6NMZ7 AL031963.3-201ENST00000606441 850 ntBASIC18.75■□□□□ 0.59
COL6A6A6NMZ7 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC18.75■□□□□ 0.59
COL6A6A6NMZ7 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL6A6A6NMZ7 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL6A6A6NMZ7 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL6A6A6NMZ7 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL6A6A6NMZ7 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL6A6A6NMZ7 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL6A6A6NMZ7 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL6A6A6NMZ7 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
COL6A6A6NMZ7 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC18.75■□□□□ 0.59
COL6A6A6NMZ7 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC18.75■□□□□ 0.59
COL6A6A6NMZ7 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC18.75■□□□□ 0.59
COL6A6A6NMZ7 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC18.75■□□□□ 0.59
COL6A6A6NMZ7 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL6A6A6NMZ7 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL6A6A6NMZ7 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC18.74■□□□□ 0.59
COL6A6A6NMZ7 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC18.74■□□□□ 0.59
COL6A6A6NMZ7 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL6A6A6NMZ7 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC18.74■□□□□ 0.59
COL6A6A6NMZ7 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL6A6A6NMZ7 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC18.74■□□□□ 0.59
COL6A6A6NMZ7 WWOX-216ENST00000569818 525 ntBASIC18.74■□□□□ 0.59
COL6A6A6NMZ7 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
COL6A6A6NMZ7 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC18.74■□□□□ 0.59
COL6A6A6NMZ7 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL6A6A6NMZ7 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC18.74■□□□□ 0.59
COL6A6A6NMZ7 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL6A6A6NMZ7 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL6A6A6NMZ7 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL6A6A6NMZ7 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
COL6A6A6NMZ7 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL6A6A6NMZ7 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC18.74■□□□□ 0.59
COL6A6A6NMZ7 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
COL6A6A6NMZ7 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC18.74■□□□□ 0.59
COL6A6A6NMZ7 LINC01568-207ENST00000641790 1380 ntBASIC18.73■□□□□ 0.59
COL6A6A6NMZ7 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL6A6A6NMZ7 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
COL6A6A6NMZ7 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
COL6A6A6NMZ7 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC18.73■□□□□ 0.59
COL6A6A6NMZ7 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL6A6A6NMZ7 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL6A6A6NMZ7 DUSP5P1-201ENST00000441325 1139 ntBASIC18.73■□□□□ 0.59
COL6A6A6NMZ7 SLC25A3P1-201ENST00000443844 931 ntBASIC18.73■□□□□ 0.59
COL6A6A6NMZ7 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC18.73■□□□□ 0.59
COL6A6A6NMZ7 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC18.73■□□□□ 0.59
COL6A6A6NMZ7 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
COL6A6A6NMZ7 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL6A6A6NMZ7 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL6A6A6NMZ7 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC18.73■□□□□ 0.59
COL6A6A6NMZ7 ANOS2P-203ENST00000472227 1816 ntBASIC18.73■□□□□ 0.59
COL6A6A6NMZ7 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL6A6A6NMZ7 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL6A6A6NMZ7 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL6A6A6NMZ7 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC18.72■□□□□ 0.59
COL6A6A6NMZ7 SERP1-205ENST00000487153 657 ntTSL 4 BASIC18.72■□□□□ 0.59
COL6A6A6NMZ7 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC18.72■□□□□ 0.59
COL6A6A6NMZ7 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL6A6A6NMZ7 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
COL6A6A6NMZ7 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL6A6A6NMZ7 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL6A6A6NMZ7 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC18.72■□□□□ 0.59
COL6A6A6NMZ7 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL6A6A6NMZ7 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL6A6A6NMZ7 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
COL6A6A6NMZ7 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL6A6A6NMZ7 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL6A6A6NMZ7 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL6A6A6NMZ7 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
COL6A6A6NMZ7 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC18.72■□□□□ 0.59
COL6A6A6NMZ7 AC091076.1-201ENST00000610741 619 ntBASIC18.72■□□□□ 0.59
COL6A6A6NMZ7 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC18.72■□□□□ 0.59
COL6A6A6NMZ7 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL6A6A6NMZ7 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL6A6A6NMZ7 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL6A6A6NMZ7 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
COL6A6A6NMZ7 AC087388.1-201ENST00000571370 1112 ntBASIC18.71■□□□□ 0.59
COL6A6A6NMZ7 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
COL6A6A6NMZ7 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL6A6A6NMZ7 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
COL6A6A6NMZ7 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC18.71■□□□□ 0.59
COL6A6A6NMZ7 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL6A6A6NMZ7 RBM17P1-201ENST00000453646 1190 ntBASIC18.71■□□□□ 0.59
COL6A6A6NMZ7 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL6A6A6NMZ7 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC18.71■□□□□ 0.59
COL6A6A6NMZ7 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC18.71■□□□□ 0.59
COL6A6A6NMZ7 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC18.71■□□□□ 0.59
COL6A6A6NMZ7 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms