Protein–RNA interactions for Protein: Q9Y5F3

PCDHB1, Protocadherin beta-1, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB1Q9Y5F3 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCDHB1Q9Y5F3 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
PCDHB1Q9Y5F3 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
PCDHB1Q9Y5F3 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PCDHB1Q9Y5F3 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
PCDHB1Q9Y5F3 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PCDHB1Q9Y5F3 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
PCDHB1Q9Y5F3 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
PCDHB1Q9Y5F3 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.67■□□□□ 0.9
PCDHB1Q9Y5F3 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
PCDHB1Q9Y5F3 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
PCDHB1Q9Y5F3 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDHB1Q9Y5F3 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDHB1Q9Y5F3 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDHB1Q9Y5F3 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDHB1Q9Y5F3 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
PCDHB1Q9Y5F3 FAM201B-201ENST00000458407 597 ntBASIC20.66■□□□□ 0.9
PCDHB1Q9Y5F3 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PCDHB1Q9Y5F3 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDHB1Q9Y5F3 KRT16P2-201ENST00000414673 1423 ntBASIC20.66■□□□□ 0.9
PCDHB1Q9Y5F3 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDHB1Q9Y5F3 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PCDHB1Q9Y5F3 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
PCDHB1Q9Y5F3 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDHB1Q9Y5F3 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDHB1Q9Y5F3 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC20.66■□□□□ 0.9
PCDHB1Q9Y5F3 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDHB1Q9Y5F3 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDHB1Q9Y5F3 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
PCDHB1Q9Y5F3 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PCDHB1Q9Y5F3 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.65■□□□□ 0.9
PCDHB1Q9Y5F3 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.65■□□□□ 0.9
PCDHB1Q9Y5F3 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
PCDHB1Q9Y5F3 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PCDHB1Q9Y5F3 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PCDHB1Q9Y5F3 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PCDHB1Q9Y5F3 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.65■□□□□ 0.9
PCDHB1Q9Y5F3 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
PCDHB1Q9Y5F3 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.65■□□□□ 0.9
PCDHB1Q9Y5F3 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PCDHB1Q9Y5F3 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC20.65■□□□□ 0.9
PCDHB1Q9Y5F3 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PCDHB1Q9Y5F3 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PCDHB1Q9Y5F3 CNN2P6-201ENST00000439038 900 ntBASIC20.65■□□□□ 0.9
PCDHB1Q9Y5F3 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC20.65■□□□□ 0.9
PCDHB1Q9Y5F3 AF201337.1-201ENST00000520239 748 ntBASIC20.65■□□□□ 0.9
PCDHB1Q9Y5F3 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
PCDHB1Q9Y5F3 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC20.65■□□□□ 0.9
PCDHB1Q9Y5F3 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC20.65■□□□□ 0.9
PCDHB1Q9Y5F3 AC105036.2-201ENST00000569468 176 ntBASIC20.65■□□□□ 0.9
PCDHB1Q9Y5F3 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PCDHB1Q9Y5F3 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
PCDHB1Q9Y5F3 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20.65■□□□□ 0.9
PCDHB1Q9Y5F3 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC20.65■□□□□ 0.9
PCDHB1Q9Y5F3 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PCDHB1Q9Y5F3 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
PCDHB1Q9Y5F3 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
PCDHB1Q9Y5F3 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
PCDHB1Q9Y5F3 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC20.64■□□□□ 0.89
PCDHB1Q9Y5F3 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
PCDHB1Q9Y5F3 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
PCDHB1Q9Y5F3 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
PCDHB1Q9Y5F3 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PCDHB1Q9Y5F3 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
PCDHB1Q9Y5F3 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC20.64■□□□□ 0.89
PCDHB1Q9Y5F3 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC20.64■□□□□ 0.89
PCDHB1Q9Y5F3 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC20.64■□□□□ 0.89
PCDHB1Q9Y5F3 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
PCDHB1Q9Y5F3 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC20.64■□□□□ 0.89
PCDHB1Q9Y5F3 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
PCDHB1Q9Y5F3 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
PCDHB1Q9Y5F3 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
PCDHB1Q9Y5F3 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PCDHB1Q9Y5F3 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PCDHB1Q9Y5F3 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PCDHB1Q9Y5F3 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.63■□□□□ 0.89
PCDHB1Q9Y5F3 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
PCDHB1Q9Y5F3 NAA20-201ENST00000310450 920 ntTSL 2 BASIC20.63■□□□□ 0.89
PCDHB1Q9Y5F3 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
PCDHB1Q9Y5F3 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PCDHB1Q9Y5F3 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
PCDHB1Q9Y5F3 KRT18P20-201ENST00000548986 1279 ntBASIC20.63■□□□□ 0.89
PCDHB1Q9Y5F3 TBCB-214ENST00000629269 413 ntTSL 5 BASIC20.63■□□□□ 0.89
PCDHB1Q9Y5F3 AC133041.1-202ENST00000642053 222 ntBASIC20.63■□□□□ 0.89
PCDHB1Q9Y5F3 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PCDHB1Q9Y5F3 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PCDHB1Q9Y5F3 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
PCDHB1Q9Y5F3 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.63■□□□□ 0.89
PCDHB1Q9Y5F3 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC20.63■□□□□ 0.89
PCDHB1Q9Y5F3 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
PCDHB1Q9Y5F3 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PCDHB1Q9Y5F3 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC20.62■□□□□ 0.89
PCDHB1Q9Y5F3 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PCDHB1Q9Y5F3 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
PCDHB1Q9Y5F3 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC20.62■□□□□ 0.89
PCDHB1Q9Y5F3 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PCDHB1Q9Y5F3 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
PCDHB1Q9Y5F3 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PCDHB1Q9Y5F3 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
PCDHB1Q9Y5F3 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms