Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC20.91■□□□□ 0.94
LHX3Q9UBR4 TSPY6P-201ENST00000448518 926 ntBASIC20.91■□□□□ 0.94
LHX3Q9UBR4 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC20.91■□□□□ 0.94
LHX3Q9UBR4 AL109923.1-201ENST00000618799 583 ntBASIC20.91■□□□□ 0.94
LHX3Q9UBR4 MARS-234ENST00000630571 216 ntTSL 5 BASIC20.91■□□□□ 0.94
LHX3Q9UBR4 MARS-235ENST00000630803 183 ntTSL 3 BASIC20.91■□□□□ 0.94
LHX3Q9UBR4 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LHX3Q9UBR4 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LHX3Q9UBR4 AC005229.4-201ENST00000610085 2198 ntBASIC20.9■□□□□ 0.94
LHX3Q9UBR4 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LHX3Q9UBR4 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LHX3Q9UBR4 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
LHX3Q9UBR4 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC20.9■□□□□ 0.94
LHX3Q9UBR4 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
LHX3Q9UBR4 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LHX3Q9UBR4 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LHX3Q9UBR4 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC20.9■□□□□ 0.94
LHX3Q9UBR4 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
LHX3Q9UBR4 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC20.9■□□□□ 0.94
LHX3Q9UBR4 GAMT-205ENST00000640762 751 ntTSL 5 BASIC20.9■□□□□ 0.94
LHX3Q9UBR4 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
LHX3Q9UBR4 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LHX3Q9UBR4 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LHX3Q9UBR4 AC011484.1-201ENST00000377652 1995 ntBASIC20.9■□□□□ 0.94
LHX3Q9UBR4 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.9■□□□□ 0.94
LHX3Q9UBR4 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LHX3Q9UBR4 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LHX3Q9UBR4 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LHX3Q9UBR4 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.89■□□□□ 0.94
LHX3Q9UBR4 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC20.89■□□□□ 0.94
LHX3Q9UBR4 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.94
LHX3Q9UBR4 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC20.89■□□□□ 0.94
LHX3Q9UBR4 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
LHX3Q9UBR4 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
LHX3Q9UBR4 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.93
LHX3Q9UBR4 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LHX3Q9UBR4 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LHX3Q9UBR4 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC20.89■□□□□ 0.93
LHX3Q9UBR4 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC20.89■□□□□ 0.93
LHX3Q9UBR4 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
LHX3Q9UBR4 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LHX3Q9UBR4 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.89■□□□□ 0.93
LHX3Q9UBR4 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC20.89■□□□□ 0.93
LHX3Q9UBR4 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
LHX3Q9UBR4 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.89■□□□□ 0.93
LHX3Q9UBR4 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LHX3Q9UBR4 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LHX3Q9UBR4 AC010980.2-201ENST00000587099 1412 ntBASIC20.88■□□□□ 0.93
LHX3Q9UBR4 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
LHX3Q9UBR4 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
LHX3Q9UBR4 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
LHX3Q9UBR4 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC20.88■□□□□ 0.93
LHX3Q9UBR4 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC20.88■□□□□ 0.93
LHX3Q9UBR4 PHB2-213ENST00000546111 858 ntTSL 2 BASIC20.88■□□□□ 0.93
LHX3Q9UBR4 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC20.88■□□□□ 0.93
LHX3Q9UBR4 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC20.88■□□□□ 0.93
LHX3Q9UBR4 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC20.88■□□□□ 0.93
LHX3Q9UBR4 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC20.88■□□□□ 0.93
LHX3Q9UBR4 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
LHX3Q9UBR4 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
LHX3Q9UBR4 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
LHX3Q9UBR4 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.87■□□□□ 0.93
LHX3Q9UBR4 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LHX3Q9UBR4 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
LHX3Q9UBR4 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC20.87■□□□□ 0.93
LHX3Q9UBR4 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LHX3Q9UBR4 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
LHX3Q9UBR4 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC20.87■□□□□ 0.93
LHX3Q9UBR4 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC20.87■□□□□ 0.93
LHX3Q9UBR4 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
LHX3Q9UBR4 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
LHX3Q9UBR4 MKRN4P-201ENST00000444706 1521 ntBASIC20.87■□□□□ 0.93
LHX3Q9UBR4 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
LHX3Q9UBR4 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC20.87■□□□□ 0.93
LHX3Q9UBR4 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LHX3Q9UBR4 AC121338.2-201ENST00000622535 1744 ntBASIC20.87■□□□□ 0.93
LHX3Q9UBR4 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
LHX3Q9UBR4 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.86■□□□□ 0.93
LHX3Q9UBR4 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC20.86■□□□□ 0.93
LHX3Q9UBR4 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.86■□□□□ 0.93
LHX3Q9UBR4 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LHX3Q9UBR4 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
LHX3Q9UBR4 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LHX3Q9UBR4 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LHX3Q9UBR4 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC20.86■□□□□ 0.93
LHX3Q9UBR4 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
LHX3Q9UBR4 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
LHX3Q9UBR4 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
LHX3Q9UBR4 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
LHX3Q9UBR4 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
LHX3Q9UBR4 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LHX3Q9UBR4 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LHX3Q9UBR4 AL355472.2-201ENST00000422958 438 ntBASIC20.85■□□□□ 0.93
LHX3Q9UBR4 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
LHX3Q9UBR4 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC20.85■□□□□ 0.93
LHX3Q9UBR4 AC100791.3-201ENST00000617619 330 ntBASIC20.85■□□□□ 0.93
LHX3Q9UBR4 CYP21A1P-202ENST00000354927 1481 ntBASIC20.85■□□□□ 0.93
LHX3Q9UBR4 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
LHX3Q9UBR4 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
LHX3Q9UBR4 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms