Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC19.98■□□□□ 0.79
CUEDC1Q9NWM3 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
CUEDC1Q9NWM3 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CUEDC1Q9NWM3 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CUEDC1Q9NWM3 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CUEDC1Q9NWM3 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CUEDC1Q9NWM3 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
CUEDC1Q9NWM3 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CUEDC1Q9NWM3 EXOC3-AS1-202ENST00000623673 1663 ntBASIC19.97■□□□□ 0.79
CUEDC1Q9NWM3 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CUEDC1Q9NWM3 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
CUEDC1Q9NWM3 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
CUEDC1Q9NWM3 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CUEDC1Q9NWM3 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CUEDC1Q9NWM3 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CUEDC1Q9NWM3 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC19.97■□□□□ 0.79
CUEDC1Q9NWM3 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC19.97■□□□□ 0.79
CUEDC1Q9NWM3 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC19.97■□□□□ 0.79
CUEDC1Q9NWM3 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CUEDC1Q9NWM3 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC19.97■□□□□ 0.79
CUEDC1Q9NWM3 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC19.97■□□□□ 0.79
CUEDC1Q9NWM3 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
CUEDC1Q9NWM3 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CUEDC1Q9NWM3 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC19.97■□□□□ 0.79
CUEDC1Q9NWM3 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CUEDC1Q9NWM3 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CUEDC1Q9NWM3 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CUEDC1Q9NWM3 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CUEDC1Q9NWM3 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CUEDC1Q9NWM3 METTL26-203ENST00000397664 604 ntTSL 2 BASIC19.96■□□□□ 0.79
CUEDC1Q9NWM3 AC091799.1-201ENST00000422823 811 ntBASIC19.96■□□□□ 0.79
CUEDC1Q9NWM3 MAP2K4P1-201ENST00000438453 1195 ntBASIC19.96■□□□□ 0.79
CUEDC1Q9NWM3 CNN2P6-201ENST00000439038 900 ntBASIC19.96■□□□□ 0.79
CUEDC1Q9NWM3 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC19.96■□□□□ 0.79
CUEDC1Q9NWM3 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC19.96■□□□□ 0.79
CUEDC1Q9NWM3 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
CUEDC1Q9NWM3 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
CUEDC1Q9NWM3 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.96■□□□□ 0.79
CUEDC1Q9NWM3 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CUEDC1Q9NWM3 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CUEDC1Q9NWM3 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
CUEDC1Q9NWM3 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CUEDC1Q9NWM3 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC19.95■□□□□ 0.78
CUEDC1Q9NWM3 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
CUEDC1Q9NWM3 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CUEDC1Q9NWM3 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CUEDC1Q9NWM3 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC19.95■□□□□ 0.78
CUEDC1Q9NWM3 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC19.95■□□□□ 0.78
CUEDC1Q9NWM3 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
CUEDC1Q9NWM3 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CUEDC1Q9NWM3 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC19.95■□□□□ 0.78
CUEDC1Q9NWM3 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC19.95■□□□□ 0.78
CUEDC1Q9NWM3 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
CUEDC1Q9NWM3 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
CUEDC1Q9NWM3 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
CUEDC1Q9NWM3 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC19.95■□□□□ 0.78
CUEDC1Q9NWM3 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CUEDC1Q9NWM3 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
CUEDC1Q9NWM3 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
CUEDC1Q9NWM3 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CUEDC1Q9NWM3 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC19.94■□□□□ 0.78
CUEDC1Q9NWM3 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CUEDC1Q9NWM3 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CUEDC1Q9NWM3 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CUEDC1Q9NWM3 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
CUEDC1Q9NWM3 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CUEDC1Q9NWM3 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
CUEDC1Q9NWM3 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CUEDC1Q9NWM3 PTPA-214ENST00000423100 988 ntTSL 2 BASIC19.94■□□□□ 0.78
CUEDC1Q9NWM3 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CUEDC1Q9NWM3 CD99P1-205ENST00000527459 561 ntBASIC19.94■□□□□ 0.78
CUEDC1Q9NWM3 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC19.94■□□□□ 0.78
CUEDC1Q9NWM3 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC19.94■□□□□ 0.78
CUEDC1Q9NWM3 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CUEDC1Q9NWM3 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CUEDC1Q9NWM3 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC19.94■□□□□ 0.78
CUEDC1Q9NWM3 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CUEDC1Q9NWM3 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
CUEDC1Q9NWM3 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC19.94■□□□□ 0.78
CUEDC1Q9NWM3 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
CUEDC1Q9NWM3 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CUEDC1Q9NWM3 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CUEDC1Q9NWM3 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CUEDC1Q9NWM3 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CUEDC1Q9NWM3 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC19.93■□□□□ 0.78
CUEDC1Q9NWM3 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CUEDC1Q9NWM3 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC19.93■□□□□ 0.78
CUEDC1Q9NWM3 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC19.93■□□□□ 0.78
CUEDC1Q9NWM3 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.93■□□□□ 0.78
CUEDC1Q9NWM3 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC19.93■□□□□ 0.78
CUEDC1Q9NWM3 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CUEDC1Q9NWM3 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC19.93■□□□□ 0.78
CUEDC1Q9NWM3 MAZ-216ENST00000616501 991 ntTSL 5 BASIC19.93■□□□□ 0.78
CUEDC1Q9NWM3 AC013268.1-206ENST00000638368 961 ntBASIC19.93■□□□□ 0.78
CUEDC1Q9NWM3 AC112229.1-201ENST00000639295 961 ntBASIC19.93■□□□□ 0.78
CUEDC1Q9NWM3 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CUEDC1Q9NWM3 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
CUEDC1Q9NWM3 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC19.93■□□□□ 0.78
CUEDC1Q9NWM3 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CUEDC1Q9NWM3 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms